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AT5G60580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.927
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 1587 Blast hits to 1239 proteins in 158 species: Archae - 0; Bacteria - 10; Metazoa - 421; Fungi - 112; Plants - 632; Viruses - 18; Other Eukaryotes - 394 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AB011483EMBL:CP002688
EnsemblPlants:AT5G60580EnsemblPlants:AT5G60580.1EnsemblPlants:AT5G60580.3entrez:836179
ExpressionAtlas:Q9FKI9Gene3D:3.30.40.10GeneID:836179GO:GO:0008270
GO:GO:0016021Gramene:AT5G60580.1Gramene:AT5G60580.3hmmpanther:PTHR23012
hmmpanther:PTHR23012:SF25HOGENOM:HOG000240594InterPro:IPR011016InterPro:IPR013083
InterPro:IPR033275KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
PANTHER:PTHR23012Pfam:PF12906Pfscan:PS51292PhylomeDB:Q9FKI9
PROSITE:PS51292Proteomes:UP000006548RefSeq:NP_568923.1RefSeq:NP_851231.1
SMART:SM00744SMR:Q9FKI9STRING:3702.AT5G60580.2SUPFAM:SSF57850
TAIR:AT5G60580TMHMM:TMhelixUniGene:At.24411unipathway:UPA00143
UniProt:Q9FKI9
Coordinates (TAIR10) chr5:+:24354298..24356706
Molecular Weight (calculated) 52853.60 Da
IEP (calculated) 8.65
GRAVY (calculated) -0.14
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)