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AT5G48460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.725
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Actin binding Calponin homology (CH) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein 2 (TAIR:AT5G35700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5069eggNOG:KOG0046EMBL:AB020745EMBL:AF042669
EMBL:AF042671EMBL:AK176846EMBL:CP002688EMBL:U77673
EnsemblPlants:AT5G48460EnsemblPlants:AT5G48460.1entrez:834901Gene3D:1.10.418.10
GeneID:834901Genevisible:O50064GO:GO:0005737GO:GO:0005856
Gramene:AT5G48460.1hmmpanther:PTHR19961hmmpanther:PTHR19961:SF25HOGENOM:HOG000213447
InParanoid:O50064InterPro:IPR001589InterPro:IPR001715InterPro:IPR011992
iPTMnet:O50064KEGG:ath:AT5G48460OMA:DNDILAWPaxDb:O50064
Pfam:O50064Pfam:PF00307Pfscan:PS50021PhylomeDB:O50064
PRIDE:O50064PRO:PR:O50064PROSITE:PS00020PROSITE:PS50021
ProteinModelPortal:O50064Proteomes:UP000006548RefSeq:NP_199657.1scanprosite:PS00020
SMART:SM00033SMR:O50064STRING:3702.AT5G48460.1SUPFAM:SSF47473
SUPFAM:SSF47576TAIR:AT5G48460UniGene:At.24143UniProt:O50064
Coordinates (TAIR10) chr5:-:19636225..19639365
Molecular Weight (calculated) 73668.90 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.20
Length 654 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGFVGILVS DPWLQNQFTQ VELRSLKSHF TSMKRESGKL TVSDLASRMG KSKVVGDQNL SNEERATLIQ NFHPNLNDEV DFEFYLRIYL NLQAHVNAII
101: GSGVKNSSAF LKAATTTLLH TISDSEKSSY VAHINNYLSG DEFLNKCLPI NPSSNDLFEV AKDGVLLCKL INVAVPGTID ERAINTKSML NPWERNENHT
201: LCLNSAKAIG CTVVNIGTQD IIEGRRHLVL GVISQIIKIQ LLADLNLKKT PQLVELVGDS KDVEELMSLP PEKILLRWMN FQLRKTEYKK TVTNFSSDVK
301: DAEAYTNLLN VLAPEHKNPS HLAVKSSFER AKLVLEHADK MGCRRYLTAK DIVEGSPNLN LAFVAHIFQH RNGLSTQTKQ ISFLENLADD IQISREEKAF
401: RFWINSFDGS VYINNVFEDL RDGWILLQTL DKVSPGIVNW KVSSKPPIKL PFKKVENCNQ VVKLGKQLKF SLVNIAGNDI VQGNKKLILA YLWQLMRYNI
501: LQLLKNLRLH SNGKEITDAD ILEWANAKVR NNGCKTRMYS FRDKSLSDGV FFLELLSSVQ PRSVNWSLVT NGVTDEEKKM NATYVISIAR KLGCSIFLLP
601: EDIIEVNQKM MLTLTASIMY WTLKQPLHLN KPIGSPDSHN GSLLDDSTSD SSIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)