suba logo
AT5G43250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit C13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit C13 (NF-YC13); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C11 (TAIR:AT3G12480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5208eggNOG:KOG1657EMBL:AB017070EMBL:AB493774
EMBL:CP002688EnsemblPlants:AT5G43250EnsemblPlants:AT5G43250.1entrez:834343
Gene3D:1.10.20.10GeneID:834343GO:GO:0003700GO:GO:0005634
GO:GO:0006355Gramene:AT5G43250.1hmmpanther:PTHR10252hmmpanther:PTHR10252:SF25
HOGENOM:HOG000152474InterPro:IPR003958InterPro:IPR009072KEGG:ath:AT5G43250
OMA:HQPTSDFPfam:PF00808PhylomeDB:Q9FHS0Proteomes:UP000006548
RefSeq:NP_199139.1SMR:Q9FHS0STRING:3702.AT5G43250.1SUPFAM:SSF47113
TAIR:AT5G43250tair10-symbols:NF-YC13UniGene:At.65631UniProt:Q9FHS0
Coordinates (TAIR10) chr5:-:17356174..17356566
Molecular Weight (calculated) 14672.80 Da
IEP (calculated) 10.34
GRAVY (calculated) -0.52
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEEGSIRP EFPIGRVKKI MKLDKDINKI NSEALHVITY STELFLHFLA EKSAVVTAEK KRKTVNLDHL RIAVKRHQPT SDFLLDSLPL PAQPVKHTKS
101: VSDKKIPAPP IGTRRIDDFF SKGKAKTDSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)