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AT5G43100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G50050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:CP002688EnsemblPlants:AT5G43100
EnsemblPlants:AT5G43100.1entrez:834326Gene3D:2.40.70.10GeneID:834326
GO:GO:0004190GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0016021Gramene:AT5G43100.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF342
InParanoid:F4K4L3InterPro:IPR001461InterPro:IPR001969InterPro:IPR021109
InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT5G43100
MEROPS:A01.A59OMA:HGPDPNYPANTHER:PTHR13683PaxDb:F4K4L3
Pfam:PF00026Pfam:PF14541Pfam:PF14543Pfscan:PS51767
PRIDE:F4K4L3PRINTS:PR00792PROSITE:PS00141PROSITE:PS51767
ProteinModelPortal:F4K4L3Proteomes:UP000006548RefSeq:NP_199124.3scanprosite:PS00141
SMR:F4K4L3STRING:3702.AT5G43100.1SUPFAM:SSF50630TAIR:AT5G43100
TMHMM:TMhelixUniGene:At.43793UniProt:F4K4L3
Coordinates (TAIR10) chr5:+:17299264..17302718
Molecular Weight (calculated) 70298.90 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.28
Length 631 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRSSLLLLL FTTTTISIFF FDLTTADESP MIFPLSYSSL PPRPRVEDFR RRRLHQSQLP NAHMKLYDDL LSNGYYTTRL WIGTPPQEFA LIVDTGSTVT
101: YVPCSTCKQC GKHQDPKFQP ELSTSYQALK CNPDCNCDDE GKLCVYERRY AEMSSSSGVL SEDLISFGNE SQLSPQRAVF GCENEETGDL FSQRADGIMG
201: LGRGKLSVVD QLVDKGVIED VFSLCYGGME VGGGAMVLGK ISPPPGMVFS HSDPFRSPYY NIDLKQMHVA GKSLKLNPKV FNGKHGTVLD SGTTYAYFPK
301: EAFIAIKDAV IKEIPSLKRI HGPDPNYDDV CFSGAGRDVA EIHNFFPEIA MEFGNGQKLI LSPENYLFRH TKVRGAYCLG IFPDRDSTTL LGGIVVRNTL
401: VTYDRENDKL GFLKTNCSDI WRRLAAPESP APTSPISQNK SSNISPSPAT SESPTSHLPG VFRVGVITFE VSISVNNSSL KPKFSEIADF IAHELDIQSA
501: QVRLLNFSSS GNEYRLKWGV FPPQSSEYIS NTTALNIMLL LKENRLRLPG QFGSYKLLEW KAEQKKKQSW WEKHLLGVVG GAMISLLVTS VMIKLALVWR
601: RRKQEEATYE PVNAAIKEQE LQPLSSETSN A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)