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AT5G41690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G45100.1); Has 16649 Blast hits to 9973 proteins in 510 species: Archae - 6; Bacteria - 487; Metazoa - 7833; Fungi - 3042; Plants - 3517; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR5XeggNOG:KOG0123EMBL:AK221749EMBL:CP002688
EnsemblPlants:AT5G41690EnsemblPlants:AT5G41690.1entrez:834172Gene3D:3.30.70.330
GeneID:834172GO:GO:0000166GO:GO:0003676Gramene:AT5G41690.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF497HOGENOM:HOG000131709InterPro:IPR000504
InterPro:IPR012677KEGG:ath:AT5G41690OMA:KLWHEREPfam:PF00076
Pfscan:PS50102PhylomeDB:Q56XC6PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_568594.3SMART:SM00360SMR:Q56XC6STRING:3702.AT5G41690.1
SUPFAM:SSF54928TAIR:AT5G41690UniGene:At.55306UniProt:Q56XC6
Coordinates (TAIR10) chr5:-:16670126..16674189
Molecular Weight (calculated) 65294.50 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.43
Length 567 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKSNSQGKR NPQYGLEANP ILKRHKKINK KKVTTKAIAF SLQQNDLLVT KSDQANLISV KEAAVREKTL FVANLPYETK IPNIIDFFKK VGEVVRVQLI
101: VNLKGKLVGC GFVEFASVNE AEEALQKKNG ECLDNNKIFL DVANKKATYL PPKYCIDHKV WDKDYRRLES HPIEEDERPP NSVEEVLFVA NLSPQTKISD
201: IFDFFNCVGE VVSIRLMVNH EGKHVGYGFV EFASADETKK ALENKNGEYL HDHKIFIDVA KTAPYPPGPK YNLVEKLCYE DYLRRESLPI DEDETPPEFV
301: EAVGVRKKTL FVAHLSRKTE ITHIINFFKD VGEVVHVRLI LNHTGKHVGC AFVEFGSANE AKMALETKNG EYLNDCKIFL EVAKMVPYPP PKYCIHHKVW
401: YEDYLRRESL LIEENETEEG LDDTPALVEE FAVRKKTLFV ANLSPRTKIS HIIKFFKDVA EVVRVRLIVN HRGEHVGCGF VEFASVNEAQ KALQKMNGEN
501: LRSREIFLDV VELAPYPLRP KYNHAEKLWH ERESLLKKQK EYEMLSERTE FCGKKIIFSY DDEDHMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)