AT3G56450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 ASURE: endoplasmic reticulum What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha-soluble NSF attachment protein 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of alpha-SNAP Gene Family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
alpha-soluble NSF attachment protein 1 (ALPHA-SNAP1); FUNCTIONS IN: soluble NSF attachment protein activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: alpha-soluble NSF attachment protein 2 (TAIR:AT3G56190.1); Has 606 Blast hits to 606 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 145; Plants - 93; Viruses - 11; Other Eukaryotes - 97 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20930557..20932869 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43883.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 381 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFFVKGEGFF YPLFIELRNL IRYQTTRVSN SSRDFNLSQQ HCSCFRPKRR HEAHLSFIGT LQYSKQRTIT RAASATIARR QLLLLFDITF SSSSSCYYFQ 101: KKAEKKLNRR RRFDTKYEDA ADLLEKARDS YKLAKSWDQA GIAYLKLADC HLKANSLANT YMIMDECMDH EIAEYYESDE MFEQAIAYYE TAAEFFQIEE 201: VTTSANQCNL KVAQYASQLE QQSRFMKTQA RHSLNNKLLK YGVKGHLLTA GMCHLCKADV VSITNALEKY QDLDPTFSGT RECKFLADLA SAIDEEDIAK 301: FTDVSKEIDS VSPLVWAVNH MQLFGCKLCL VLDHDNNVVE GKREVQGQGA GGGCKLYLIE GKCILDWNNV YTKRIYNYTN F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)