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AT5G02320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 3r-5
Curator
Summary (TAIR10)
Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5).
Computational
Description (TAIR10)
myb domain protein 3r-5 (MYB3R-5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AY519649EMBL:CP002688
EnsemblPlants:AT5G02320EnsemblPlants:AT5G02320.1EnsemblPlants:AT5G02320.2entrez:831802
Gene3D:1.10.10.60GeneID:831802GO:GO:0003677GO:GO:0003700
GO:GO:0006355Gramene:AT5G02320.1Gramene:AT5G02320.2hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF492HOGENOM:HOG000241478InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT5G02320KO:K09422OMA:RINSKAY
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q6R032PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_001190206.1RefSeq:NP_568099.1SMART:SM00717
SMR:Q6R032STRING:3702.AT5G02320.1SUPFAM:SSF46689TAIR:AT5G02320
tair10-symbols:ATMYB3R5tair10-symbols:MYB3R-5UniGene:At.63784UniProt:Q6R032
Coordinates (TAIR10) chr5:-:483445..486347
Molecular Weight (calculated) 61734.60 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.83
Length 548 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSNPPVC SPEKEERSEM KIEIQCMENK QPLAASCSSA SEGSGCFFLK SPEIATPATV SSFPRRTSGP MRRAKGGWTP EEDETLRRAV EKYKGKRWKK
101: IAEFFPERTE VQCLHRWQKV LNPELVKGPW TQEEDDKIVE LVKKYGPAKW SVIAKSLPGR IGKQCRERWH NHLNPGIRKD AWTVEEESAL MNSHRMYGNK
201: WAEIAKVLPG RTDNAIKNHW NSSLKKKLEF YLATGNLPPP ASKFIVLKDI ADGDRDSKQS SATKPFKDSD SLTQTSSGNT DSNEVGRDHF DSSSALLEEV
301: AASRRIGVNE YACSPVEYKP QLPNLEPISE EVRINSKAYF ERSIQRKVEN GFGTPKHGNL YYKSPLDYYF PSEADLQHMY GYECGCSPGA ASPVSLMTTP
401: CNKDSGLTAT RSPESFLREA ARTFPNTPSI FRKRRKVVLA AKTDAVVVVN GVVKEVDRKE ESKDMRKSLL LETTDNCSDD EELGLNGNAF NLSPPYRLRA
501: KRTAVIKSRQ LEFTSEKEKQ PDNEIEFTSA KEKQPDNEIK TSEEDKPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)