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AT4G39560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.752
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G49000.2); Has 3492 Blast hits to 2791 proteins in 179 species: Archae - 4; Bacteria - 195; Metazoa - 1983; Fungi - 9; Plants - 1156; Viruses - 39; Other Eukaryotes - 106 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AK176780EMBL:AL078620
EMBL:AL161595EMBL:BT029469EMBL:CP002687EnsemblPlants:AT4G39560
EnsemblPlants:AT4G39560.1EnsemblPlants:AT4G39560.2entrez:830110Gene3D:2.130.10.80
GeneID:830110Genevisible:Q67XN8Gramene:AT4G39560.1Gramene:AT4G39560.2
hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23HOGENOM:HOG000242515InParanoid:Q67XN8
InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT4G39560
OMA:VGVAYNPPaxDb:Q67XN8Pfam:PF00646Pfam:PF01344
Pfam:Q67XN8Pfscan:PS50181PhylomeDB:Q67XN8PIR:T09372
PRO:PR:Q67XN8PROSITE:PS00018PROSITE:PS50181ProteinModelPortal:Q67XN8
Proteomes:UP000006548RefSeq:NP_195666.2RefSeq:NP_974716.1SMART:SM00256
SMART:SM00612SMR:Q67XN8SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT4G39560UniGene:At.43033UniProt:Q67XN8
Coordinates (TAIR10) chr4:-:18382940..18383740
Molecular Weight (calculated) 29491.70 Da
IEP (calculated) 8.65
GRAVY (calculated) -0.02
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPVKKMKK KTTTSPILSP TPHSTQILSL PVDLLISILA RVSRLDYPIL SLVSKSFRSL IASPELYETR SLLGRTESCL YLCLGIPSDF NPRWFTLCRK
101: PKPSGHVMAA ISIPNSRPVH CSGLVAVGSD IYNIGGSIIN EHSSSVSILD CRYHTWRDAP NMLVERNSHA ANVIDGKIYV AGGSRDSNSS NWMEVFDIKT
201: QTWEPVLNPI ADGCDRRIRK SAVIEEAICL FGYKGVGVAY NPRIDKWEAI GEVNYLDLGW VWLLVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)