AT3G24070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47920.1); Has 77 Blast hits to 77 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8693543..8694331 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28159.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 262 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWLKIRGIPI QYLCDGTVRE IASSMGEVME VELDDGMVDL SSVRARVNVC VDTRLCFKKV ARFDSGEVKI VSFRYEDIGM SKARFKFCFN CGDMNHLARN 101: CLIPWVDVPD PYERSLSPPP HESNSDGSAE GNCGDGGTSS GTLELLELVD AVQDFPVGDG EQLELAGVVQ DLPVGDGEQQ QQGLDGVEEA NATQVDSEMV 201: GISSEGSKRK FDAVEQGDEN PEKRLRGITD ATEGGSTDAT QGGSTDATEE GLGVSLKPLQ GE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)