AT4G29740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytokinin oxidase 4 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytokinin oxidase 4 (CKX4); FUNCTIONS IN: primary amine oxidase activity, cytokinin dehydrogenase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase 2 (TAIR:AT2G19500.1); Has 4201 Blast hits to 4198 proteins in 819 species: Archae - 66; Bacteria - 2589; Metazoa - 17; Fungi - 1008; Plants - 315; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14566351..14568754 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46609.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.10 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 428 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNTLCLSLI TLITLFISLT PTLIKSDEGI DVFLPISLNL TVLTDPFSIS AASHDFGNIT DENPGAVLCP SSTTEVARLL RFANGGFSYN KGSTSPASTF 101: KVAARGQGHS LRGQASAPGG VVVNMTCLAM AAKPAAVVIS ADGTYADVAA GTMWVDVLKA AVDRGVSPVT WTDYLYLSVG GTLSNAGIGG QTFRHGPQIS 201: NVHELDVITG KGEMMTCSPK LNPELFYGVL GGLGQFGIIT RARIALDHAP TRVKWSRILY SDFSAFKRDQ ERLISMTNDL GVDFLEGQLM MSNGFVDTSF 301: FPLSDQTRVA SLVNDHRIIY VLEVAKYYDR TTLPIIDQVI DTLSRTLGFA PGFMFVQDVP YFDFLNRVRN EEDKLRSLGL WEVPHPWLNI FVPGSRIQDF 401: HDGVINGLLL NQTSTSGVTL FYPTNRNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)