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AT4G02850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.808
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phenazine biosynthesis PhzC/PhzF family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phenazine biosynthesis PhzC/PhzF family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT1G03210.1); Has 3282 Blast hits to 3279 proteins in 1066 species: Archae - 40; Bacteria - 2414; Metazoa - 118; Fungi - 78; Plants - 90; Viruses - 0; Other Eukaryotes - 542 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0384eggNOG:KOG3033EMBL:BT015373EMBL:BT015675
EMBL:CP002687EnsemblPlants:AT4G02850EnsemblPlants:AT4G02850.1entrez:828160
GeneID:828160GO:GO:0009058GO:GO:0047661Gramene:AT4G02850.1
hmmpanther:PTHR13774hmmpanther:PTHR13774:SF17InterPro:IPR003719KEGG:00520+5.1.-.-
KEGG:00960+5.1.-.-KEGG:ath:AT4G02850OMA:HCSLAHYPfam:PF02567
PhylomeDB:Q66GM9PIRSF:PIRSF016184Proteomes:UP000006548RefSeq:NP_192194.2
SMR:Q66GM9STRING:3702.AT4G02850.1SUPFAM:SSF54506TAIR:AT4G02850
TIGRfam:TIGR00654TIGRFAMs:TIGR00654UniGene:At.27972UniGene:At.50315
UniProt:Q66GM9
Coordinates (TAIR10) chr4:-:1266535..1268569
Molecular Weight (calculated) 33760.80 Da
IEP (calculated) 6.76
GRAVY (calculated) 0.12
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMLVKKPVK YFMVDAFTES AFKGNQAAVC FLEEDHERDD VWLQSMASEF DLPLTCFLIP IPGSEPPRFL LRWFTAVAEM DICGHATLAS AHSIFSNSLV
101: GSSDTVEFST NSGILTAKRL SDCDSKRSFL IEMNFPVITT CEYSSKDVSI FSKALNGATI VDVRETKTDR LIFKPLIGAF KTTSTDQIIV VLSSWESVIE
201: FQPRVDDIVK CPGKVMIVTA AAPQGSPFDF CSRLFAPKLG LNEDSVCGSA HCSLAHYWSL KMNKCDFVAF AASQRSGTLK VHYDKEKQRV LLTGKAVTVM
301: KGSILV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)