AT4G25610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2H2-like zinc finger protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 1178 Blast hits to 1100 proteins in 218 species: Archae - 0; Bacteria - 148; Metazoa - 375; Fungi - 111; Plants - 98; Viruses - 2; Other Eukaryotes - 444 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13063801..13066860 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66006.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.78 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||||||||||
| Length | 586 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENTPVQLFQ LLHTLERPGW PLLTPLKIQM QKCEKCSREF CSPVNFRRHN RMHRRQRKPE KDFGKERDAL 101: GAFWNKLSAT DAKEILSVKS MMLEDIPGAS VESGLMSLIE KPGYTALPQY YLRAGSGLLD LLQARPPRLP ISSQELFSIL DDASEKTFLS SEAAPMQKYI 201: FDGEIGKTVL EAKNVVACAS FLLEQRLIKA WLADKDAEAL RCQNLLVEEE EAARRRKAEL LERKKRKKLR QKEQREKDQK KDAKEDESTT SEEQQYPAEP 301: SSPLSVASDS EAQTPDSLPI DDSSSLEEPQ VLETNNGRNS ETQVPMVDGL DNGQNMERRS GRRQMQRSQQ GMPNGFHADH APNLGGMRKN GTNRDARANT 401: TKVWSRKSDN PKLISQHAAV TQQDQTKSSE FIVGSLSVSI RNSGEHNQTK CSEGERRTKT VEVKPASEQS TVKIWRPVSS QGRKTSTVNG NTDKEDKRSN 501: PTTPEVKNAH HISLQFNNHE AKAFLAKRWK EATSAEHVTL VLSQETDISG NNTHESSNGV ITARSKLRTK AEKGTKVKYV PKQRIP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)