suba logo
AT4G14410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic Helix-Loop-Helix 104 (bHLH104); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G23210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12383eggNOG:ENOG410IYBZeggNOG:ENOG4111C3ZEMBL:AF488628
EMBL:AL161538EMBL:AY088053EMBL:AY102106EMBL:AY133565
EMBL:CP002687EMBL:Z97336EnsemblPlants:AT4G14410EnsemblPlants:AT4G14410.1
entrez:827086Gene3D:4.10.280.10GeneID:827086Genevisible:Q8L467
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355hmmpanther:PTHR23042hmmpanther:PTHR23042:SF72HOGENOM:HOG000238732
InParanoid:Q8L467InterPro:IPR011598KEGG:ath:AT4G14410ncoils:Coil
OMA:DQELRPPPaxDb:Q8L467Pfam:PF00010Pfam:Q8L467
Pfscan:PS50888PhylomeDB:Q8L467PIR:B71406PRO:PR:Q8L467
PROSITE:PS50888ProteinModelPortal:Q8L467Proteomes:UP000006548RefSeq:NP_567431.1
RefSeq:NP_849383.1SMART:SM00353SMR:Q8L467STRING:3702.AT4G14410.1
SUPFAM:SSF47459TAIR:AT4G14410tair10-symbols:bHLH104UniGene:At.4272
UniProt:Q8L467
Coordinates (TAIR10) chr4:+:8300077..8301503
Molecular Weight (calculated) 31997.20 Da
IEP (calculated) 4.36
GRAVY (calculated) -0.80
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MYPSLDDDFV SDLFCFDQSN GAELDDYTQF GVNLQTDQED TFPDFVSYGV NLQQEPDEVF SIGASQLDLS SYNGVLSLEP EQVGQQDCEV VQEEEVEINS
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)