AT5G39590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TLD-domain containing nucleolar protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); Has 191 Blast hits to 191 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 11; Plants - 49; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15851483..15853768 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59911.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||
| Length | 542 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGASSSTDDK ESSEKREIES LAASTGALPL LKRSFSKLVD SQTNTVPFQS LKQSFGLSYD TITTEGEQKV SDLFPKLLEH LGSSLVDLFF VPDKEGLSWV 101: EFASGYVKCC GRMSNSMSFN TLLRVYYVTA KNAGFSPKLE FESDEADCKI NGSISVSELL VFLWMCWTMS WDGRSSKAAE MKGCLFLPDI SHLILSAVVS 201: CTDSESGNSL DVWETDVSGL ELELPIGKFL TWALMTVPCL TECLSHFCNS RLQNVTSAED GSGPSKSTAV DDSASKTSEN TLLTCGRAWA ISLTSKSTIS 301: EEILSSCFPG NSGEPNEHLL YRSYYHGKGM NRLWSNVEGY HAPILVIISA SCKVEHEATS SERKWVIGAI LQQGFENRDA FYGSSGNLFS ISPVFHAFSS 401: SGKEKNFAYS HLHPAGGVYD AHPKPVGIGF GGTLGNERIF IDEDFAKITV RHHAVDKTYQ SGSLFPNQGY LPVEALVLDI EAWGLGGNKA REIQQKYQKR 501: EELFTNQRRK IDLKTFTNWE DSPEKMMMDM MGNPNAPRKE ER |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)