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AT4G10060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.929
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31819005 (2020): endoplasmic reticulum
  • PMID:31819005 (2020): plasma membrane
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Beta-glucosidase, GBA2 type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT1G33700.2); Has 794 Blast hits to 727 proteins in 173 species: Archae - 72; Bacteria - 219; Metazoa - 159; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
Protein Annotations
EC:3.2.1.45eggNOG:COG4354eggNOG:KOG2119EMBL:CP002687
EnsemblPlants:AT4G10060EnsemblPlants:AT4G10060.1entrez:826597GeneID:826597
GO:GO:0004348GO:GO:0005773GO:GO:0006680GO:GO:0016021
Gramene:AT4G10060.1hmmpanther:PTHR12654hmmpanther:PTHR12654:SF8InParanoid:F4JLJ2
InterPro:IPR006775InterPro:IPR008928InterPro:IPR014551InterPro:IPR024462
KEGG:00511+3.2.1.45KEGG:00600+3.2.1.45KEGG:ath:AT4G10060KO:K17108
ncoils:CoilOMA:ITAKEMWPaxDb:F4JLJ2Pfam:PF04685
Pfam:PF12215PIRSF:PIRSF028944PRIDE:F4JLJ2ProteinModelPortal:F4JLJ2
Proteomes:UP000006548Reactome:R-ATH-1660662RefSeq:NP_192744.6STRING:3702.AT4G10060.1
SUPFAM:SSF48208TAIR:AT4G10060UniGene:At.21935UniGene:At.33655
UniProt:F4JLJ2
Coordinates (TAIR10) chr4:+:6289355..6295258
Molecular Weight (calculated) 104356.00 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.43
Length 922 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKNGHTESE LQTQMVGNER LPQVTWQRKL NSKVKNPSEF KMSIRDVLHL FPLGYRLWRY TKEEAKKGRF SMYDIFKKRH VRGDHGVPLG GIGGGSIGRS
101: YKGEFQQFKL FPKICEEAPI LTNQFSVFVS RPGGLSYSTV LCPTKPKSVK GKTEDLGIES WDWNMEGDKS TYHALYPRSW TVYNEPDPEL RIVSRQVSPF
201: IPHNYKESSL PVSVFEFTMS NLGKEEATVT LLFTWENSVG GASGLTGEHF NSTIMERDGV HAIVLHHKTG NGHPPVTYAI AAQETEDVHV SECPCFLVSG
301: HSPKEITAKE MWDEIKKNKS FDELNSEPGS PSRPGTSIGA AIAAKVKVPP GCDRTVTFSL SWDCPEVRFN EKTYHRRYTK FYGNLGDAAV KMARDALLNY
401: VDWESQIEAW QSPILSDTTL PDWYRVTLFN ELYYFNSGGT IWTDGLPPKE SIERSKVTNT EQNDIVIDLF QKINAVCEQI YSPQSSNSEE NIGQFIYLEG
501: IEYLMYNTYD VHFYSSFALL SLFPKLALSI QRDFAATVLI QDPTKKKIMS SGEWVTRKLL GSVPHDIGLN DPWLELNEYN FFNTDRWKDL NAKFVLQVYR
601: DVVATNDQSF AKAVWPSVYT AVAYLDQFDK DEDGMIENEG FPDQTYDAWS VTGVSAYCGG LWVAALQAAS AFASIVGENA VAIYFNAKYE KAKIVYEKLW
701: NGSYFNYDDS GSGSSSSILA DQLAGQWYAR ACGLKPITKE EWIKKALETI YEFNVMKVKG GTRGAVNGMS TEGKVDTNSL VSKEVWAGTT YSVAACMIQE
801: GQREKGFQTA SGIYEAIWSD RGLSCSFQTP EAWNMNDEYR SLCYMRPLAI WAIQWALTRT QSFGEEKQKL VAGDEEEESN LLLRQHKGFK DVARFVKIVP
901: TSNVHRSRLQ HTYETVLKTL RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)