suba logo
AT4G02520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:17317660 (2007): plasma membrane
  • PMID:16207701 (2006): plastid
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutathione S-transferase PHI 2
Curator
Summary (TAIR10)
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.
Computational
Description (TAIR10)
glutathione S-transferase PHI 2 (GSTF2); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: phloem, cotyledon, root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase F3 (TAIR:AT2G02930.1); Has 12309 Blast hits to 12301 proteins in 1354 species: Archae - 0; Bacteria - 6906; Metazoa - 1516; Fungi - 747; Plants - 1046; Viruses - 0; Other Eukaryotes - 2094 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G02520-MONOMERBioGrid:13222EC:2.5.1.18eggNOG:COG0625
eggNOG:KOG0867EMBL:AC002330EMBL:AF324681EMBL:AF326903
EMBL:AF349527EMBL:AL161494EMBL:AY039580EMBL:AY056082
EMBL:CP002687EMBL:L07589EMBL:L11601EMBL:X75303
EnsemblPlants:AT4G02520EnsemblPlants:AT4G02520.1entrez:827931EvolutionaryTrace:P46422
Gene3D:1.20.1050.10Gene3D:3.40.30.10GeneID:827931Genevisible:P46422
GO:GO:0004364GO:GO:0004601GO:GO:0005773GO:GO:0005783
GO:GO:0005829GO:GO:0005886GO:GO:0006749GO:GO:0009407
GO:GO:0009409GO:GO:0009506GO:GO:0009507GO:GO:0009570
GO:GO:0009651GO:GO:0009734GO:GO:0010043GO:GO:0016020
GO:GO:0042742GO:GO:0043231GO:GO:0043295GO:GO:0046686
GO:GO:0048046GO:GO:0050832GO:GO:2001147GO:GO:2001227
Gramene:AT4G02520.1hmmpanther:PTHR11260hmmpanther:PTHR11260:SF201HOGENOM:HOG000125746
InParanoid:P46422InterPro:IPR004045InterPro:IPR004046InterPro:IPR010987
InterPro:IPR012336KEGG:ath:AT4G02520KO:K00799OMA:QYAIMAI
PaxDb:P46422PDB:1BX9PDB:1GNWPDBsum:1BX9
PDBsum:1GNWPfam:P46422Pfam:PF00043Pfam:PF02798
Pfscan:PS50404Pfscan:PS50405PhylomeDB:P46422PIR:S35268
PRIDE:P46422PRO:PR:P46422PROSITE:PS50404PROSITE:PS50405
ProteinModelPortal:P46422Proteomes:UP000006548RefSeq:NP_192161.1SMR:P46422
STRING:3702.AT4G02520.1SUPFAM:SSF47616SUPFAM:SSF52833SWISS-2DPAGE:P46422
TAIR:AT4G02520tair10-symbols:ATGSTF2tair10-symbols:ATPM24tair10-symbols:ATPM24.1
tair10-symbols:GST2tair10-symbols:GSTF2UniGene:At.22195UniGene:At.24972
UniProt:P46422
Coordinates (TAIR10) chr4:-:1110673..1111531
Molecular Weight (calculated) 24129.90 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.32
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGIKVFGHP ASIATRRVLI ALHEKNLDFE LVHVELKDGE HKKEPFLSRN PFGQVPAFED GDLKLFESRA ITQYIAHRYE NQGTNLLQTD SKNISQYAIM
101: AIGMQVEDHQ FDPVASKLAF EQIFKSIYGL TTDEAVVAEE EAKLAKVLDV YEARLKEFKY LAGETFTLTD LHHIPAIQYL LGTPTKKLFT ERPRVNEWVA
201: EITKRPASEK VQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)