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AT4G38540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD/NAD(P)-binding oxidoreductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G05320.1); Has 5392 Blast hits to 5382 proteins in 1070 species: Archae - 48; Bacteria - 3093; Metazoa - 5; Fungi - 1172; Plants - 539; Viruses - 0; Other Eukaryotes - 535 (source: NCBI BLink).
Protein Annotations
DNASU:830011eggNOG:COG0654eggNOG:KOG2614EMBL:AJ007588
EMBL:AL035540EMBL:AL161593EMBL:CP002687EnsemblPlants:AT4G38540
EnsemblPlants:AT4G38540.1entrez:830011Gene3D:3.50.50.60GeneID:830011
GO:GO:0004497GO:GO:0050832GO:GO:0071949Gramene:AT4G38540.1
hmmpanther:PTHR13789hmmpanther:PTHR13789:SF185HOGENOM:HOG000239066InterPro:IPR002938
InterPro:IPR023753KEGG:ath:AT4G38540OMA:FERRSKVPfam:PF01494
PhylomeDB:O81816PIR:T05682Proteomes:UP000006548RefSeq:NP_195566.1
SMR:O81816STRING:3702.AT4G38540.1SUPFAM:SSF51905SwissPalm:O81816
TAIR:AT4G38540UniGene:At.483UniProt:O81816
Coordinates (TAIR10) chr4:+:18023187..18024827
Molecular Weight (calculated) 45507.60 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.21
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEGSPDII IVGAGISGLS TAVGLHRLGI RSMVLESSET LRATGFAFTT WFNAWKAMEA LGVSQHIRSL HDRLEGWVVG TISAGTPPTE MLFPESEEYE
101: SRCVQRKLLL EALAGELPEE TIRFSSKVVH IELSGCYKKV HLSDGTILKT KVLVGCDGVY SVVGKWLGFK NPATTARLAI RGLTHFPEGH GFGKRFFQFY
201: GDGVRSGFIP CDHNTVYWFL THTSTDIDEE TNSEILKEFV LNKIKDLPEN IKNVVETTDL DSMVMSQLKY RPPWELLWSN ITKDNVCVAG DALHPMTPDI
301: GQGGCSAMED GVILARCLGE AIKAKSLKGE TEENEEEGYK RIEEGLKKYA GERKWRSIDL ITTAYTVGFI QQSRGKWMNM FRDRFLSSYL SRMLLKKSHF
401: DCGSLVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)