AT5G18470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Curculin-like (mannose-binding) lectin family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; INVOLVED IN: response to karrikin; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G67520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6127952..6129193 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45810.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 413 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALSIVLLPF ILILIPTFLS SVFAVSPLKT DTLKPGQQLR DWEQLISADG IFTLGFFTPK DSSTSELGSA GLRYLGIWPQ SIPINLVWVG NPTESVSDSS 101: GSLSIDTNGV LKITQANAIP ILVNQRPAAQ LSLVGNVSAI LLDTGNFVVR EIRPGGVPGR VLWQSFDHPT NTLLPGMKIG FNLRTKKEVS VTSWITDQVP 201: VPGAFRLGLD PSGANQLLVW RRGEIYWSSG ILTNNGSSHL NLEVSRHYID YEFKFDSNKY MKYFSYSIKK ANSSVFSSWF LDTLGQITVT FSLSSNNSST 301: WISESSEPCK TDLKNSSAIC ITEKPTACRK GSEYFEPRRG YMMENNTGYY PFYYDDSLSA GLSDCHGTCW RNCSCIAFQA FPDGCQYWEK GSKFVPYDSF 401: NSNLVTYVLD SVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)