AT4G00380.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : XH/XS domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G15910.1); Has 52398 Blast hits to 32322 proteins in 2074 species: Archae - 615; Bacteria - 6626; Metazoa - 25839; Fungi - 3724; Plants - 1961; Viruses - 202; Other Eukaryotes - 13431 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:167959..170448 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73168.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.20 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 635 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDISDEESEI SESEIEEYSK TPYHLLRSET YYKVKVNGRL RCPFCVGKKK QDYKYKELHA HATGVSKGSA TRSALQKSNH LALAKFLEND LAGYAEPLPR 101: PPVVPPLLDE TEPNPHNVYV WPWMGIVVNP LKETDDKELL LDSVYWLQTL SKFKPVEVNA FWVEQDSIVG VIAKFDSDWS GFAAATELEK EFETQGSCKK 201: EWTERSGDSE SKAYGWCARA DDFQSQGPIG EYLSKEGTLR TVSDILQNNV QDRNTLLDVL SNMIDMTNED LNKAQHSYNR TAMSLQRVLD EKKNLHQAFA 301: EETKKMQQMS LRHIQRILYD KEKLRNELDR KMRDLESRAK QLEKHEALTE LERQKLDEDK RKSDAMNKSL QLASREQKKA DESVLRLVEE HQRQKEDALN 401: KILLLEKQLD TKQTLEMEIQ ELKGKLQVMK HLGDDDDEAV QTKMKEMNDE LDDKKAELED LESMNSVLMT KERQSNDEIQ AARQKMIAGL TGLLGAESDI 501: GVKRMGELDE KPFLDVCKLR YSANEARVEA ATLCSTWKEN LKNPSWQPFK REGTGDGAEE VVDEDDEQLK KLKREWGKEV HNAVKAALVE MNEYNASGRY 601: PTSELWNFKE GRKATLKEVI TFISTDIKNL KRKRT |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)