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AT4G00390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

onion epidermal cell layer (peroxisomal marker)

At4g-GFP-00390
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA-binding storekeeper protein-related transcriptional regulator
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; LOCATED IN: nucleolus; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT1G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J012eggNOG:ENOG410YYUREMBL:AB493663EMBL:AF013293
EMBL:AF195115EMBL:AL161471EMBL:CP002687EMBL:DQ446789
EnsemblPlants:AT4G00390EnsemblPlants:AT4G00390.1entrez:828200GeneID:828200
GO:GO:0003677GO:GO:0005730GO:GO:0006355Gramene:AT4G00390.1
hmmpanther:PTHR31662hmmpanther:PTHR31662:SF1HOGENOM:HOG000097067InterPro:IPR007592
KEGG:ath:AT4G00390OMA:MELEECGPfam:PF04504PhylomeDB:O23063
PIR:T01532Proteomes:UP000006548RefSeq:NP_191949.1TAIR:AT4G00390
UniGene:At.34565UniProt:O23063
Coordinates (TAIR10) chr4:-:171650..172744
Molecular Weight (calculated) 39211.20 Da
IEP (calculated) 6.05
GRAVY (calculated) -0.77
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKKLDPPTA PSSDEDDVET SEDDSSSSEE DEPIKSLPAT TAAAPAKSTA VSAATPAKST SVSAAAPSKS TAVSAAADSD SGSESETDSD SESTDPPKSG
101: SGKTIASKKK DDPSSSTATL ALPAVKSGAK RAASEAATTS TKRVKKDEES VKKPALFQRL WSDDDEISML QGMIDYHADT GKSPSADTNA FYEFQKKSIS
201: FEVSKSQFSD KVRSLRKKYR AKEGKDEPRF VKAHDKKAFE LSKFIWGPKG IALDSNAKSN GVSKKSASKT KEKLDSVKQD LAFVGVSSTN GDDWFEKSSL
301: ARMIAGSGID EYYVRQKWSS FTLETKKIVE EKFQLMQAKE LEAMLDKSVR LTDLTSYFVD ASKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)