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AT1G12550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-isomer specific 2-hydroxyacid dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT2G45630.2); Has 29393 Blast hits to 29385 proteins in 2729 species: Archae - 468; Bacteria - 18116; Metazoa - 729; Fungi - 1168; Plants - 597; Viruses - 5; Other Eukaryotes - 8310 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12550-MONOMERBRENDA:1.1.1.81EC:1.1.1.79EC:1.1.1.81
eggNOG:COG1052eggNOG:KOG0069EMBL:AC025416EMBL:AC025417
EMBL:AK221605EMBL:BT011735EMBL:CP002684EnsemblPlants:AT1G12550
EnsemblPlants:AT1G12550.1entrez:837811Gene3D:3.40.50.720GeneID:837811
Genevisible:Q9LE33GO:GO:0009853GO:GO:0009854GO:GO:0016618
GO:GO:0030267GO:GO:0051287Gramene:AT1G12550.1hmmpanther:PTHR10996
hmmpanther:PTHR10996:SF131HOGENOM:HOG000136700InParanoid:Q9LE33InterPro:IPR006139
InterPro:IPR006140InterPro:IPR016040iPTMnet:Q9LE33KEGG:ath:AT1G12550
KO:K15919ncoils:CoilOMA:CLITHAMPaxDb:Q9LE33
Pfam:PF00389Pfam:PF02826Pfam:Q9LE33PhylomeDB:Q9LE33
PRIDE:Q9LE33PRO:PR:Q9LE33ProteinModelPortal:Q9LE33Proteomes:UP000006548
RefSeq:NP_172716.1SMR:Q9LE33STRING:3702.AT1G12550.1SUPFAM:SSF51735
SUPFAM:SSF52283TAIR:AT1G12550UniGene:At.43667UniProt:Q9LE33
Coordinates (TAIR10) chr1:+:4274649..4275831
Molecular Weight (calculated) 34914.00 Da
IEP (calculated) 5.91
GRAVY (calculated) 0.16
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESSEPPVV LLHRPPSLTF MDEILTREFR TLITDTSSSE SLPSFFPRHA SSARAFVISG RLPVTDELLS HLPSLQILVC TSVGIDHIDL AACKRRGIVI
101: TNAGNAFSDD VADCAVGLLI SVLRRIPAAD RYVRSGNWAK FGDFQLGSKV SGKRVGIVGL GSIGSFVAKR LESFGCVISY NSRSQKQSSP YRYYSDILSL
201: AENNDVLVLC CSLTDETHHI VNREVMELLG KDGVVINVGR GKLIDEKEMV KCLVDGVIGG AGLDVFENEP AVPQELFGLD NVVLSPHFAV ATPGSLDNVA
301: QIALANLKAF FSNRPLLSPV QLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)