AT1G12550.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:peroxisome 1.000 ASURE: peroxisome What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : D-isomer specific 2-hydroxyacid dehydrogenase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT2G45630.2); Has 29393 Blast hits to 29385 proteins in 2729 species: Archae - 468; Bacteria - 18116; Metazoa - 729; Fungi - 1168; Plants - 597; Viruses - 5; Other Eukaryotes - 8310 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:4274649..4275831 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 34914.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 323 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAESSEPPVV LLHRPPSLTF MDEILTREFR TLITDTSSSE SLPSFFPRHA SSARAFVISG RLPVTDELLS HLPSLQILVC TSVGIDHIDL AACKRRGIVI 101: TNAGNAFSDD VADCAVGLLI SVLRRIPAAD RYVRSGNWAK FGDFQLGSKV SGKRVGIVGL GSIGSFVAKR LESFGCVISY NSRSQKQSSP YRYYSDILSL 201: AENNDVLVLC CSLTDETHHI VNREVMELLG KDGVVINVGR GKLIDEKEMV KCLVDGVIGG AGLDVFENEP AVPQELFGLD NVVLSPHFAV ATPGSLDNVA 301: QIALANLKAF FSNRPLLSPV QLD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)