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AT2G35760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.571
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G16442.1); Has 688 Blast hits to 688 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 688; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:3492eggNOG:ENOG410IWAPeggNOG:ENOG410YHDUEMBL:AC006068
EMBL:AF462840EMBL:AY088673EMBL:AY124824EMBL:CP002685
EnsemblPlants:AT2G35760EnsemblPlants:AT2G35760.1entrez:818148GeneID:818148
Genevisible:Q8L924GO:GO:0005886GO:GO:0016021Gramene:AT2G35760.1
hmmpanther:PTHR11615hmmpanther:PTHR11615:SF100HOGENOM:HOG000238832InParanoid:Q8L924
InterPro:IPR006459InterPro:IPR006702KEGG:ath:AT2G35760OMA:VMAYFTI
PaxDb:Q8L924Pfam:PF04535Pfam:Q8L924PhylomeDB:Q8L924
PIR:F84772PRIDE:Q8L924PRO:PR:Q8L924Proteomes:UP000006548
RefSeq:NP_565822.1TAIR:AT2G35760TIGRfam:TIGR01569TIGRFAMs:TIGR01569
TMHMM:TMhelixUniGene:At.28259UniProt:Q8L924
Coordinates (TAIR10) chr2:+:15032059..15033094
Molecular Weight (calculated) 21514.20 Da
IEP (calculated) 10.04
GRAVY (calculated) 0.76
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYLGVGVSP GNVSGSTTKM KLIDRKVRVT ELILRCLVCV LALVAAILIA TDVQVREIFM IQKKAKFTDM KALVLLVVVN GIAAGYSLVQ AVRCVVGLMK
101: GRVLFSKPLA WAIFFGDQAV AYLCVAGVAA AAQSAAFAKL GEPELQWMKI CNMYGKFCNQ VGEGIASALF ACIGMVLISC ISAFGVFRLY GGSKSRPSSR
201: W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)