AT2G35760.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.571 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Uncharacterised protein family (UPF0497) | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G16442.1); Has 688 Blast hits to 688 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 688; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:15032059..15033094 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 21514.20 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.04 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.76 | ||||||||||||||||||||||||||||||||||||||||
Length | 201 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSYLGVGVSP GNVSGSTTKM KLIDRKVRVT ELILRCLVCV LALVAAILIA TDVQVREIFM IQKKAKFTDM KALVLLVVVN GIAAGYSLVQ AVRCVVGLMK 101: GRVLFSKPLA WAIFFGDQAV AYLCVAGVAA AAQSAAFAKL GEPELQWMKI CNMYGKFCNQ VGEGIASALF ACIGMVLISC ISAFGVFRLY GGSKSRPSSR 201: W |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)