AT5G62730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 6918 Blast hits to 6790 proteins in 1275 species: Archae - 0; Bacteria - 3368; Metazoa - 483; Fungi - 402; Plants - 2165; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25197494..25200033 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65246.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.37 | ||||||||||||||||||||||||||||||||||||||||
| Length | 589 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTNYTAINH ILHFHSPNSC FLMIMSLEFE QMDEANRLSA WNGYVDWRSR PALRGRHGGM LAASFVLVVE VLENLAFLAN ASNLVLYLST KMGFSPSGAA 101: NAVTAFMGTA FFLALLGGFL ADAFFTTFHI YLVSAAIEFL GLMVLTVQAH EHSTEPWSRV FLFVGLYLVA LGVGGIKGSL PPHGAEQFDE ETSSGRRQRS 201: FFFNYFIFSL SCGALIAVTV VVWLEDNKGW SYGFGVSTAA ILISVPVFLA GSRVYRLKVP SGSPITTLFK VLTAALYAKY KKRRTSRIVV TCHTRNDCDD 301: SVTKQNCDGD DGFLGSFLGE VVRERESLPR PLRCTEEQVK DVKIVIKILP IFMSTIMLNC CLAQLSTFSV QQASTMNTKL GSFTVPPAAL PVFPVVFMMI 401: LAPTYNHLLL PLARKSTKTE TGITHLQRIG TGLVLSIVAM AVAALVETKR KHVVVSCCSN NNSSSYSSSP LPITFLWVAI QYVFLGSADL FTLAGMMEFF 501: FTEAPSTMRS LATSLSWASL AMGYYFSSVL VSAVNFVTGL NHHNPWLLGE NLNQYHLERF YWLMCVLSGI NFLHYLFWAS RYVYRSNQG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)