AT1G65150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.865 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G65050.1); Has 512 Blast hits to 426 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 496; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24204167..24205558 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33585.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 296 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSNASDPAV LKTWRRNPPS STLVRLSQLA NEKYESPPFS SGAHNWRLVV HPKGNEADNG SGFVSMYVEC LSSTTPPIDV FAYLTFFVFS EEEKKYLSFQ 101: DVEVKRFNSS KTVWGLSKAL PVETLKDRAK GFILYGEEHE FGAHVKIVSR PASFGEDLPF HKFSWTIRDF ALLEQNDYVS KTFHMGEKDW TLKLYPKGDS 201: EADDKLIQHL HLADGETLAK GELIFVRVNL KVLDPRGSNH LTGSLNCWLM NSNKAWGLPQ SMSFDKNEGA YLDREGTLEV EIECEIKNSH KNHPFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)