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AT3G48670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : XH/XS domain-containing protein
Curator
Summary (TAIR10)
Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway.
Computational
Description (TAIR10)
INVOLVED IN DE NOVO 2 (IDN2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, chromatin silencing, DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G12550.2); Has 76122 Blast hits to 43343 proteins in 2243 species: Archae - 1068; Bacteria - 10039; Metazoa - 36284; Fungi - 4878; Plants - 2932; Viruses - 220; Other Eukaryotes - 20701 (source: NCBI BLink).
Protein Annotations
BioGrid:9345eggNOG:ENOG410IJMPeggNOG:ENOG410YGHFEMBL:AL133315
EMBL:AY065184EMBL:BT000136EMBL:CP002686EnsemblPlants:AT3G48670
EnsemblPlants:AT3G48670.1EnsemblPlants:AT3G48670.2entrez:824027GeneID:824027
Genevisible:Q8VZ79GO:GO:0003723GO:GO:0004526GO:GO:0005655
GO:GO:0006306GO:GO:0006342GO:GO:0031047GO:GO:0046686
GO:GO:0090502Gramene:AT3G48670.1Gramene:AT3G48670.2hmmpanther:PTHR21596
hmmpanther:PTHR21596:SF25HOGENOM:HOG000237495InParanoid:Q8VZ79InterPro:IPR005379
InterPro:IPR005380InterPro:IPR005381KEGG:ath:AT3G48670ncoils:Coil
OMA:VNIMKEWPaxDb:Q8VZ79PDB:4E8UPDBsum:4E8U
Pfam:PF03468Pfam:PF03469Pfam:PF03470Pfam:Q8VZ79
PhylomeDB:Q8VZ79PIR:T46211PRIDE:Q8VZ79PRO:PR:Q8VZ79
ProteinModelPortal:Q8VZ79Proteomes:UP000006548RefSeq:NP_190436.2RefSeq:NP_974403.1
SMR:Q8VZ79STRING:3702.AT3G48670.1TAIR:AT3G48670tair10-symbols:IDN2
tair10-symbols:RDM12UniGene:At.27894UniProt:Q8VZ79
Coordinates (TAIR10) chr3:+:18031240..18033615
Molecular Weight (calculated) 74828.50 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.95
Length 647 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSTVILSSD DEDSDISESE MDEYGDKMYL NLKGGKLKVR LSPQAFICPY CPNKKKTSFQ YKDLLQHASG VGNSNSDKRS AKEKASHLAL VKYLQQDLAD
101: SASEAEPSSK RQKNGNPIQD CDHDEKLVYP WKGIVVNIPT TKAQDGRSAG ESGSKLRDEY ILRGFNPTRV RPLWNYLGHS GTAIVEFNKD WNGLHNGLLF
201: DKAYTVDGHG KKDWLKKDGP KLGLYGWIAR ADDYNGNNII GENLRKTGDL KTIAELTEEE ARKQELLVQN LRQLVEEKKK DMKEIEELCS VKSEELNQLM
301: EEKEKNQQKH YRELNAIQER TMSHIQKIVD DHEKLKRLLE SERKKLEIKC NELAKREVHN GTERMKLSED LEQNASKNSS LELAAMEQQK ADEEVKKLAE
401: DQRRQKEELH EKIIRLERQR DQKQAIELEV EQLKGQLNVM KHMASDGDAE VVKEVDIIFK DLGEKEAQLA DLDKFNQTLI LRERRTNDEL QEAHKELVNI
501: MKEWNTNIGV KRMGELVTKP FVDAMQQKYC QQDVEDRAVE VLQLWEHYLK DSDWHPFKRV KLENEDREVE VIDDRDEKLR ELKADLGDGP YNAVTKALLE
601: INEYNPSGRY ITTELWNFKA DKKATLEEGV TCLLDQWEKA KRKRGMA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)