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AT3G57580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.952
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G57590.1); Has 1525 Blast hits to 1451 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1523; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:10241eggNOG:ENOG410JQGDeggNOG:ENOG41114Q1EMBL:AK221854
EMBL:AL049660EMBL:BT014897EMBL:BT015756EMBL:CP002686
EnsemblPlants:AT3G57580EnsemblPlants:AT3G57580.1entrez:824925Gene3D:3.80.10.10
GeneID:824925Gramene:AT3G57580.1hmmpanther:PTHR31790hmmpanther:PTHR31790:SF10
HOGENOM:HOG000064703InParanoid:Q6ICX6InterPro:IPR001810InterPro:IPR013187
InterPro:IPR017451InterPro:IPR032675KEGG:ath:AT3G57580OMA:IVICNPI
PaxDb:Q6ICX6Pfam:PF00646Pfam:PF08268Pfam:Q6ICX6
Pfscan:PS50181PhylomeDB:Q6ICX6PIR:T06762PRIDE:Q6ICX6
PRO:PR:Q6ICX6PROSITE:PS50181ProteinModelPortal:Q6ICX6Proteomes:UP000006548
RefSeq:NP_191317.2SMART:SM00256SUPFAM:SSF81383TAIR:AT3G57580
TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.34821UniProt:Q6ICX6
Coordinates (TAIR10) chr3:-:21320800..21322026
Molecular Weight (calculated) 46704.30 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.10
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRGKMNVSL PTDLIREIFA RLPSKSVARF RTLSKQWASI LRSTDFTKLF LSRSSNRPRL LFAVERYKCN EWQFFSSPQS QNRYEKSAHL EFHSKFSGDV
101: SHYICSYASG LLYFPAVHIV DTETIVICNP ITGMYTGLPV IMKDRRSRGF LVFDPVDKRF KAFDTHFILT LGSGELKWRE KNIPCPLYER CSSNQGICIN
201: GVLYYLAKTV LVETVFGLTF LIVRFDVSSE EFKFIDAARF NDRLKDPTRL SLVNYMGKLG VTDCNCVDAG GRRTVELCLW VLEDVEKLEW VKYVYTLPEN
301: EVLASCEFSV AGVTATGDIV LCMKYTCKPY YVFYFNPEKK TLQTVEIQGF GAKLEEVENR GEVFAYVDYV EDLSLNDAKQ LKSSISHVKS LCPCCQKLVQ
401: PENIGEVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)