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AT3G57590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.760
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G57580.1); Has 1804 Blast hits to 1730 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1802; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JQGDeggNOG:ENOG41114Q1EMBL:AL049660EMBL:CP002686
EnsemblPlants:AT3G57590EnsemblPlants:AT3G57590.1entrez:824928GeneID:824928
Gramene:AT3G57590.1hmmpanther:PTHR31790hmmpanther:PTHR31790:SF10HOGENOM:HOG000064703
InParanoid:Q9SVX4InterPro:IPR001810InterPro:IPR013187InterPro:IPR017451
iPTMnet:Q9SVX4KEGG:ath:AT3G57590PaxDb:Q9SVX4Pfam:PF00646
Pfam:PF08268Pfam:Q9SVX4Pfscan:PS50181PhylomeDB:Q9SVX4
PIR:T06761PRIDE:Q9SVX4PRO:PR:Q9SVX4PROSITE:PS50181
ProteinModelPortal:Q9SVX4Proteomes:UP000006548RefSeq:NP_191318.4SMART:SM00256
STRING:3702.AT3G57590.1SUPFAM:SSF81383TAIR:AT3G57590TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.65286UniProt:Q9SVX4
Coordinates (TAIR10) chr3:-:21330182..21331396
Molecular Weight (calculated) 46339.10 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.26
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPIPNDLIL EIFSRLPAKS VIGFRTLSKH WASMLRSPVF TELFLTRSSN RPRLLFAAER NGEWLFFSSP QPQNRYEKSS HLDYHTKFSG DVSRFICSYV
101: SGLLCFPDLW LSKDASPVIC NPTTGMYESL PDLMRYKNAR GFLGFDPIGK QFKVLSEAYP FSDQREHHEI LTLGTEELSW RSNIISCPAY DRSLSEGICI
201: NGVLYYLAQT LGVPSCVIIC FDVRSEEFKY FDAGCFNDQL DDTSGLILVN YEGKLSGINW KYGQAGERRT VELRMWVLED AEKHEWVKYV YTLPENEVLD
301: SCDFSVAGVT TRGDIVLCMK YTCKPFYVFY FNPERNTLQS VEIQDFGANL EAVENCGRVY AFVNHVEDLR VNKGKQLKSS ISQVKHLCSC CNKVSQPDYH
401: YQKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)