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AT1G50790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant mobile domain protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant mobile domain protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G50820.1); Has 578 Blast hits to 565 proteins in 32 species: Archae - 2; Bacteria - 2; Metazoa - 14; Fungi - 6; Plants - 524; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ6XeggNOG:ENOG410YCGIEMBL:AC079284EMBL:CP002684
EMBL:DQ446349EnsemblPlants:AT1G50790EnsemblPlants:AT1G50790.1entrez:841501
GeneID:841501Gramene:AT1G50790.1hmmpanther:PTHR16007hmmpanther:PTHR16007:SF20
HOGENOM:HOG000149124InterPro:IPR006904InterPro:IPR019557KEGG:ath:AT1G50790
OMA:ERCESIVPANTHER:PTHR16007Pfam:PF10536PhylomeDB:Q9C6J9
PIR:H96544Proteomes:UP000006548RefSeq:NP_175494.1TAIR:AT1G50790
UniGene:At.66002UniProt:Q9C6J9
Coordinates (TAIR10) chr1:-:18824050..18826488
Molecular Weight (calculated) 91491.60 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.53
Length 812 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPTENSNR SSSSKKPHLL KPCLTSINES QAHLCQKRSA PSPDLEALST SVTFWGWRYP HNKFNSWARK MSALHEPIWR KAGIFEAILA STYKIFKNTD
101: LVMGIAEKWC PDTNTFVFSW GEATITLEDV MVLLGFSVLG SPVFATLDSS GKEIMAKLGK EWLKIKKDKG TFVTQIAWIE RFMDSGDELE HLAFLVLWLS
201: YFVFPTRYYH IYEAIWPIAI HLSNGTKMAL APAVLAHLYA DLSLLKNHIT ALSESPIKVE IDLSSLCKLV NVWIWERFRA LQSKPNLLLK GEPRLALWND
301: LKQRTSNAKR ILNNSKIDGF EWCPYTKTVK NWDFPQFYPE KATWVTLVPN RDDEFISFAR CIMVSQLVGI DSLEHYYPNR VASQFGRLQD VHCPVNRNNL
401: SREAAWNDYY KPLDDLELYI PSRSAISCDT PMFCDSWRKR VVGSAKTLRT SIGDDTSFVP SGSKMNRRSE DGRKIAEDST KKRLKFMKSA RKNDGSTMGQ
501: KQVISDDADD DDSLTVAQIT TLYKKKYSEN SGGNASEPLG KKIRLEADNN GLEPCQKLSS IRYDGDETVP PPEIKKRNEE TGSKSGMRVV LSPFDESNSS
601: KPPVDFGRAI DIVVSAPETM TFCDDVYGNN AEKKTMIDDD SEELKCLLHE DGTITREMAR SDKKCCSEAE KEDADGGISD KVLASKADNK KSIPYQKLAS
701: GCANGDETSK AYKPKVLKRS DGNQAHACLL PDDGIRSEET MKSNEQLKVF EKRNNDLGEG DVDNDTTEKR SQKLNVLALS IEERVLKAER TVAWLNQRRA
801: IKQRKVAAAG LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)