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AT2G24630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Glycosyl transferase family 2 protein
Curator
Summary (TAIR10)
encodes a gene similar to cellulose synthase
Computational
Description (TAIR10)
ATCSLC08; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Cellulose-synthase-like C5 (TAIR:AT4G31590.1); Has 5319 Blast hits to 5316 proteins in 1532 species: Archae - 206; Bacteria - 4134; Metazoa - 30; Fungi - 95; Plants - 510; Viruses - 14; Other Eukaryotes - 330 (source: NCBI BLink).
Protein Annotations
CAZy:GT2eggNOG:COG1215eggNOG:ENOG410IIMWEMBL:KJ138900
EnsemblPlants:AT2G24630EnsemblPlants:AT2G24630.1entrez:816999ExpressionAtlas:W8Q3F7
Gene3D:3.90.550.10GeneID:816999GO:GO:0016021GO:GO:0016740
Gramene:AT2G24630.1hmmpanther:PTHR32044hmmpanther:PTHR32044:SF13InterPro:IPR029044
KEGG:ath:AT2G24630OMA:LTSKIAMPaxDb:W8Q3F7Pfam:PF13641
Pfam:Q9SJA2PhylomeDB:W8Q3F7ProteinModelPortal:W8Q3F7RefSeq:NP_180039.1
SMR:Q9SJA2SMR:W8Q3F7STRING:3702.AT2G24630.1SUPFAM:SSF53448
tair10-symbols:ATCSLC08tair10-symbols:ATCSLC8tair10-symbols:CSLC08TMHMM:TMhelix
UniGene:At.39129UniProt:Q9SJA2UniProt:W8Q3F7
Coordinates (TAIR10) chr2:-:10471558..10473984
Molecular Weight (calculated) 79493.30 Da
IEP (calculated) 8.15
GRAVY (calculated) 0.09
Length 690 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPRFDFSDL WAKETRRGTP VVVKMENPNY SIVEVEEPDS AFQPMEKSRG KNAKQVTWVL LLKAHKAVGC LTWVATVFWS LLGSVKRRLS FTHPLGSERL
101: GRDGWLFSAI KLFLVASLAI LAFELVAYYR GWHYFKNPNL HIPTSKLEIQ SLLHLFYVGW LSLRADYIAP PIKALSKFCI VLFLVQSVDR LILCLGCLWI
201: KFKKIKPRID EEHFRNDDFE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRLL VQVLDDSDDE SIQELIRDEV TKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEF VAIFDADFQP NSDFLKLTVP HFKEKPELGL VQARWAFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LRSILTSKIA MWKKANLILL FFLLRKLILP
501: FYSFTLFCVI LPITMFVPEA ELPIWVICYV PIFMSLLNIL PAPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLALTDK
601: ESEKMPNQIL RGVSDSELLE ISQVEEQKKQ PVSVKKTNKI FHKELALAFL LLTAAVRSLL ASQGVHFYFL LFQGLTFLLV GLDLIGEQMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)