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AT1G14460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G02480.1); Has 16118 Blast hits to 16088 proteins in 2833 species: Archae - 487; Bacteria - 9881; Metazoa - 404; Fungi - 514; Plants - 302; Viruses - 52; Other Eukaryotes - 4478 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2812eggNOG:ENOG410IUKKEMBL:AC012188EMBL:CP002684
EnsemblPlants:AT1G14460EnsemblPlants:AT1G14460.1entrez:838008Gene3D:3.40.50.300
GeneID:838008Genevisible:F4HW65GO:GO:0003677GO:GO:0003887
GO:GO:0005524GO:GO:0005886GO:GO:0006260GO:GO:0009360
Gramene:AT1G14460.1hmmpanther:PTHR11669hmmpanther:PTHR11669:SF0HOGENOM:HOG000244020
InParanoid:F4HW65InterPro:IPR003593InterPro:IPR008921InterPro:IPR012763
InterPro:IPR022754InterPro:IPR027417iPTMnet:F4HW65KEGG:ath:AT1G14460
ncoils:CoilOMA:QSMYHRRPaxDb:F4HW65Pfam:F4HW65
Pfam:PF12169Pfam:PF13177PIR:D86279PRIDE:F4HW65
PRO:PR:F4HW65ProteinModelPortal:F4HW65Proteomes:UP000006548RefSeq:NP_172898.2
SMART:SM00382SMR:F4HW65STRING:3702.AT1G14460.1SUPFAM:SSF48019
SUPFAM:SSF52540TAIR:AT1G14460TIGRfam:TIGR02397TIGRFAMs:TIGR02397
UniGene:At.43554UniGene:At.69297UniProt:F4HW65
Coordinates (TAIR10) chr1:-:4948962..4952750
Molecular Weight (calculated) 124898.00 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.60
Length 1116 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSGLRISDPS KLHLKKELTH IRKVASKGLR DPGTTSSWKS PLTSSRFVVE PPASNNVEIL SNNQLDSQFP SSRVFGNNGK EKEKKVFLYN WKTQRTSSEK
0101: TEGEDETSWI QASLNDDDDD DDDVSDARNG GDSCLEETRS ASMIRKSGFI KKKSKELDLS IGRKSTAKAR NFPSHHLHVA SGLSVVRDES DETEDFSNSE
0201: NFPTKVSSPL LLKLKRKNWS RSSSKFLRGT SKREDSSHTC NSTPALSTSS YNMYGIRNPS TVGSWEDGDD ELDDDNLDFK GRQGCGIPFY WTKRNLKHRG
0301: GCRSCCSPSF SDTLRRKGSS ILCGSQSVYR RHRHSSGRFN KQKLALRSAK GVLPLLKYGG DSRGGSSIGI GYSDDDLSTD FGEIDLEAQS RLDGRRWSSC
0401: CKSQDGEREE EEEGGSTPES IQSLSQKYKP MFFDELIGQS IVVQSLMNAV KKGRVAHVYL FQGPRGTGKT STARILSAAL NCDVVTEEMK PCGYCKECSD
0501: YMLGKSRDLL ELDAGKKNGA EKVRYLLKKL LTLAPQSSQR YKVFVIDECH LLPSRTWLSL LKFLENPLQK FVFVCITTDL DNVPRTIQSR CQKYIFNKVR
0601: DGDIVVRLRK IASDENLDVE SQALDLIALN ADGSLRDAET MLEQLSLMGK RITVDLVNEL VGVVSDDKLL ELLELALSSD TAETVKKARE LLDLGADPIL
0701: MMSQLASLIM DIIAGAYKAL DEKYSEAFLD RRNLTEADLE RLKHALKLLS EAEKQLRVST DRSTWFIATL LQLGSMPSPG TTHTGSSRRQ SSRATEESIS
0801: REVIAYKQRS GLQCSNTASP TSIRKSGNLV REVKLSSSSS EVLESDTSMA SHDDTTASTM TLTCRNSEKL NDIWIKCVDR CHSKTLKQLL YAHGKLLSIS
0901: EVEGILVAYI AFGEGEIKAR AERFVSSITN SIEMVLRRNV EVRIILLSET ELLNSKQTRQ IAVTTSSYTE SGNEIPMKRI EAIIQEQRLE TEWLQKTPGS
1001: QGRLKPERNQ ILPQEDTNGV KVLKICEMGE FQENQSGKRM EHCPVSPSLL HNSNFTNNKD NLGYESESGR GVCSLLFCWN TQKSPRRTKI KGTSMRSRRS
1101: RERRFSLFSA CARPRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)