AT5G41140.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.947 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Myosin heavy chain-related protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Myosin heavy chain-related protein; BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G63300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:16468726..16472546 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113141.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.86 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||
| Length | 983 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFKSSRWRSE KSNKIKIVFK LQFHATQVTQ LKAEGLTISV VPGDVGKSTG KAEKAMVLDG HCRWESPVYE TVKFLQDVKT GKVNQRIYHL VMSTTGSTKS 101: GVVGETSIDF ADYVDAIKTC NVSLPLQNSN SKAMLHVAIQ RQLENADPQR VVKESDSLVK RSRGQDLKSH LSIEADESHK SDSQEEGPFG KASRITELRR 201: RASIESDSTL SSFDSVSELD TLGEVEIRGD HIQQNHSTMH HHSVRNVYEE PHISESEWSG SSDQGISTDD SMNSSNDTIP RDTTRTSSDN EVDKLKAELG 301: ALARRTDLSE LELQSLRKQI VKETKRSQDL LREVTSLKQE RDLLKADNES NKASDKRKEE AKIRNKLQLE GRDPHVLLEE TREELDYEKD LNSNLRLQLQ 401: KTQESNTELI LAVQDLEAME GQRTKKTVDL PGPRTCERNT EESRRMSCTS ETDDDEDQKA LDELVKGHMD AKEAHVLERR ITDLYNEIEI YKRDKEDLEI 501: QVEQLSLDYE ILKQENHDIS YKLEQSQVQE QLKMQYECSS SLVNVNELEN HVESLEAKLK KQYKECSESL YRIKELETQI KGMEEELEKQ AQIFEGDIEA 601: VTRAKVEQEQ RAIEAEEALR KTRWKNASVA GKIQDEFKRI SEQMSSTLAA NEKVTMKAMT ETRELRMQKR QLEELLMNAN DELRVNRVEY EAKLNELSGK 701: TDLKTKEMKR MSADLEYQKR QKEDVNADLT HEITRRKDEI EILRLDLEET RKSSMETEAS LSEELQRIID EKEAVITALK SQLETAIAPC DNLKHSLSNN 801: ESEIENLRKQ VVQVRSELEK KEEEMANLEN REASADNITK TEQRSNEDRI KQLEGQIKLK ENALEASSKI FIEKEKDLKN RIEELQTKLN EVSQNSQETD 901: ETLQGPEAIA MQYTEVLPLS KSDNLQDLVN EVASLREQNG LMETELKEMQ ERYSEISLRF AEVEGERQQL VMTVRYLKNA KKR |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)