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AT2G41550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rho termination factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rho termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112); Has 1046 Blast hits to 715 proteins in 227 species: Archae - 8; Bacteria - 305; Metazoa - 330; Fungi - 184; Plants - 18; Viruses - 2; Other Eukaryotes - 199 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVZNeggNOG:ENOG41105EKEMBL:AK118768EMBL:BT005497
EMBL:CP002685EnsemblPlants:AT2G41550EnsemblPlants:AT2G41550.1entrez:818753
GeneID:818753GO:GO:0006353Gramene:AT2G41550.1HOGENOM:HOG000148313
InterPro:IPR011112KEGG:ath:AT2G41550OMA:EAEEHSCPfam:PF07498
Proteomes:UP000006548RefSeq:NP_181686.2SMART:SM00959STRING:3702.AT2G41550.1
SUPFAM:SSF68912TAIR:AT2G41550UniGene:At.69847UniProt:Q8GWL7
Coordinates (TAIR10) chr2:-:17329086..17330830
Molecular Weight (calculated) 52701.00 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.80
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDDDDLWGP PRVFVVVQDD TFRKQTVRRC EFWFDFRTDV LEENFQNEKY CELVWRILTE KKRQVTEIAE LERVSVSVSA QNDTASSGSG GDLHEIDSSD
101: SDKTLSTTLP DSDTSSAKLA LDDDENTSSI SDAQTAQTVQ IRDSSNDDTE DIEPETRLMP HETAANDPLT VEVAEDADTS SSPVLESKID EAEEHSCSSL
201: VTDQVFDPIK QALENKSSSA ISRESIGGST LRPLHLETRE KANTTDEDGD ILKDHQQNDS LQDIVTVSEP FTTESLLEMC DEPDKGRDIP CGERSKKSHP
301: EAVVKTVVKD ELIISLLTEA RKKAESKNPG SVLIKKRQRQ SNSSDNKGAN TSFIRNIKQK VQGGAGEINI DPVKNSTQST PKIIRGSSVP TQHADSLLDS
401: SMDGKIQRGG KNVSGSLISL SISELKKKTG KELRSIAKDL KVQHYYKLKK EDLLQRITNQ LNPQLADCTK QRMES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)