AT3G52100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G08020.1); Has 2078 Blast hits to 1918 proteins in 172 species: Archae - 0; Bacteria - 21; Metazoa - 1521; Fungi - 60; Plants - 220; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19319343..19322773 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77477.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.65 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||
| Length | 696 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFHVACPIT CRKICFCVLG FSRNLHGNEV KDVYLKEIHS LQEFVRNPWD AEVSKDGTVQ IHVPKLAVFD TGPRIAARNV GVGSDSAMEV VAASSNLVPA 101: KRTLVLQKKA VEVYAANDCS GDLEESVFVR KRVFSDVDYL YLVSVKDLNE EDHDHHSASI TCHMCYLVEV GKSERAKMLS CKCCGKKYHR NCVKSWAQHR 201: DLFNWSSWAC PSCRICEGCG TLGDPKKFMF CKRCDDAYHC DCQHPRHKNV SSGPYLCPKH TKCYSCESTV PGNGQSLRWF LGHTCCDACG RLFVKGNYCP 301: VCLKVYRDSE ATPMVCCDFC QRWVHCQCDG ISDEKYMQFQ VDGNLQYKCS TCRGESYQVK DLEDAVQEIW KRKDMADKDL IASLKASARV VGQTGGAPLM 401: NQPGSVERKV SEKAMVNGEE EKPLRVLRIK SSRPQDSDSE KFGKHATELS TVKAKKLVIS IGPRKTGVTN STSCDVSKTA SKSNGKQEKL QAEETFSREE 501: RRSLLGKNSD EKRGSRGEVT TLKAEGGFIG RHSDGKGDLN SGSHDSSQKD SRRLLKLKIK KHNPEGQESE APSIVYERSK SGKGHRSKRK RASPPAEKSA 601: FNEDEDVSLS REDSLLDEML DASWILKKLG KDAKGKKVQI HEASDDSWEK GVVSEVGGAG GTSKLMVTLE NGKVKTVELG KQGVRFVPQK QKRTRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)