AT3G47040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.925 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 3, active site (InterPro:IPR019800); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47000.1); Has 10727 Blast hits to 9894 proteins in 1605 species: Archae - 69; Bacteria - 6667; Metazoa - 14; Fungi - 1566; Plants - 482; Viruses - 0; Other Eukaryotes - 1929 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17324231..17327105 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69653.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.82 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 636 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGSNETCVY KNKDAPVEAR VKDLLSRMTL PEKIGQMTQI ERVVTTPPVI TDNFIGSVLN GGGSWPFEDA KTSDWADMID GYQNAALASR LGIPIIYGID 101: AVHGNNNVYG ATIFPHNIGL GATSLVMLLH IDLEPKSLGR NKVVVKCDRD ADLIRRVGAA TALEVRACGA HWAFAPCVAA LRDPRWGRSY ESYSEDPDII 201: CELSSLVSGL QGEPPKEHPN GYPFLAGRNN VVACAKHFVG DGGTDKGINE GNTIVSYEEL EKIHLAPYLN CLAQGVSTVM ASYSSWNGSK LHSDYFLLTE 301: LLKQKLGFKG FVISDWEALE RLSEPFGSNY RNCVKISVNA GVDMVMVPFK YEQFIKDLTD LVESGEVTMS RIDDAVERIL RVKFVAGLFE HPLTDRSLLG 401: TVGCKEHREL ARESVRKSLV LLKNGTNSEK PFLPLDRNVK RILVTGTHAD DLGYQCGGWT KAWFGLSGRI TIGTTLLDAI KEAVGDKTEV IYEKTPSEET 501: LASLQRFSYA IVAVGETPYA ETLGDNSELT IPLNGNDIVT ALAEKIPTLV VLFSGRPLVL EPLVLEKAEA LVAAWLPGTE GQGMTDVIFG DYDFEGKLPV 601: SWFKRVDQLP LTADANSYDP LFPLGFGLNY NSSENV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)