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AT5G44460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.501
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calmodulin like 43
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
calmodulin like 43 (CML43); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 42 (TAIR:AT4G20780.1); Has 15485 Blast hits to 11560 proteins in 1261 species: Archae - 1; Bacteria - 65; Metazoa - 6030; Fungi - 3167; Plants - 4134; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AB017065EMBL:BT010849
EMBL:BT020593EMBL:CP002688EMBL:Z26706EnsemblPlants:AT5G44460
EnsemblPlants:AT5G44460.1entrez:834473Gene3D:1.10.238.10GeneID:834473
Genevisible:Q9FI19GO:GO:0005509GO:GO:0046686Gramene:AT5G44460.1
hmmpanther:PTHR10891hmmpanther:PTHR10891:SF589HOGENOM:HOG000233018InParanoid:Q9FI19
InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247iPTMnet:Q9FI19
KEGG:ath:AT5G44460KO:K13448OMA:FECLHREPaxDb:Q9FI19
Pfam:PF13405Pfam:PF13499Pfam:Q9FI19Pfscan:PS50222
PhylomeDB:Q9FI19PRIDE:Q9FI19PRO:PR:Q9FI19PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:Q9FI19Proteomes:UP000006548RefSeq:NP_199259.1
scanprosite:PS00018SMART:SM00054SMR:Q9FI19STRING:3702.AT5G44460.1
SUPFAM:SSF47473TAIR:AT5G44460tair10-symbols:CML43UniGene:At.30074
UniProt:Q9FI19
Coordinates (TAIR10) chr5:+:17917286..17917831
Molecular Weight (calculated) 20254.70 Da
IEP (calculated) 4.34
GRAVY (calculated) -0.39
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MEINNEKKKL SRQSSSFRLR SPSLNALRLH RVFDLFDKNN DGFITVEELS QALSRLGLDA DFSDLKSTVD SFIKPDKTGL RFDDFAALHK TLDESFFGGE
101: GSCCDGSPES DLEEAFNVFD EDGDGFISAV ELQKVLKKLG LPEAGEIEQV EKMIVSVDSN HDGRVDFFEF KNMMQTVVVP S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)