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AT3G12145.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
A novel leucine-rich repeat protein. Interacts directly with MADS domain transcription factor.
Computational
Description (TAIR10)
FLOR1 (FLR1); FUNCTIONS IN: enzyme inhibitor activity, transcription factor binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: polygalacturonase inhibiting protein 1 (TAIR:AT5G06860.1); Has 42601 Blast hits to 16185 proteins in 663 species: Archae - 31; Bacteria - 1045; Metazoa - 3045; Fungi - 233; Plants - 35461; Viruses - 0; Other Eukaryotes - 2786 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTKReggNOG:ENOG41107RGEMBL:AP002063EMBL:AY059802
EMBL:AY085937EMBL:BT001172EMBL:CP002686EnsemblPlants:AT3G12145
EnsemblPlants:AT3G12145.1entrez:820391Gene3D:3.80.10.10GeneID:820391
GO:GO:0008134GO:GO:0010228Gramene:AT3G12145.1hmmpanther:PTHR27000
hmmpanther:PTHR27000:SF136InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675
KEGG:ath:AT3G12145OMA:AHNICLCPfam:PF00560Pfam:PF08263
Pfam:PF13516Pfscan:PS51257PhylomeDB:Q9LH52Proteomes:UP000006548
RefSeq:NP_974291.4SMR:Q9LH52STRING:3702.AT3G12145.1SUPFAM:SSF52058
TAIR:AT3G12145tair10-symbols:FLOR1tair10-symbols:FLR1UniGene:At.17445
UniProt:Q9LH52
Coordinates (TAIR10) chr3:-:3874764..3876075
Molecular Weight (calculated) 35810.20 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.04
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLFVHLSIF FSILFITLPS SYSCTENDKN ALLQIKKALG NPPLLSSWNP RTDCCTGWTG VECTNRRVTG LSVTSGEVSG QISYQIGDLV DLRTLDFSYL
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)