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AT5G06870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polygalacturonase inhibiting protein 2
Curator
Summary (TAIR10)
Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.
Computational
Description (TAIR10)
polygalacturonase inhibiting protein 2 (PGIP2); FUNCTIONS IN: polygalacturonase inhibitor activity; INVOLVED IN: response to salt stress, signal transduction, defense response; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: polygalacturonase inhibiting protein 1 (TAIR:AT5G06860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG3DeggNOG:ENOG410YB0YEMBL:AB010697EMBL:AF229250
EMBL:AY035121EMBL:AY113916EMBL:CP002688EnsemblPlants:AT5G06870
EnsemblPlants:AT5G06870.1entrez:830578Gene3D:3.80.10.10GeneID:830578
Genevisible:Q9M5J8GO:GO:0005576GO:GO:0005618GO:GO:0009505
GO:GO:0009506GO:GO:0016020GO:GO:0043086GO:GO:0090353
Gramene:AT5G06870.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF136HOGENOM:HOG000066206
InParanoid:Q9M5J8InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675
iPTMnet:Q9M5J8KEGG:ath:AT5G06870OMA:WIVDISRPaxDb:Q9M5J8
Pfam:PF08263Pfam:PF13855Pfam:Q9M5J8PhylomeDB:Q9M5J8
PRIDE:Q9M5J8PRO:PR:Q9M5J8ProteinModelPortal:Q9M5J8Proteomes:UP000006548
RefSeq:NP_196305.1SMR:Q9M5J8STRING:3702.AT5G06870.1SUPFAM:SSF52058
TAIR:AT5G06870tair10-symbols:ATPGIP2tair10-symbols:PGIP2UniGene:At.20009
UniProt:Q9M5J8
Coordinates (TAIR10) chr5:+:2133941..2135016
Molecular Weight (calculated) 37069.90 Da
IEP (calculated) 9.05
GRAVY (calculated) -0.17
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)