AT3G11890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sterile alpha motif (SAM) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11860.1); Has 845 Blast hits to 523 proteins in 122 species: Archae - 0; Bacteria - 34; Metazoa - 393; Fungi - 118; Plants - 48; Viruses - 10; Other Eukaryotes - 242 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3756026..3757609 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55624.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.13 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||
| Length | 500 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKLRPRQLE LSKTVPSKLG FDGEEDAWVF VKKQKIFIVL PSLPLPQQQH FTLEKPAISP QLEAGFRESM EVTQDSTFVH TVVPSLPLPE TPQSQAELRD 101: ALADTHFTTP VPTVVVPALP LPEQFILHKP ETSHSQVQFR DCIANTHKTT PLHTVVHSLP VTEHSTLQKP TSSQSQVELR ESIADTHGTT PLQTEISSLP 201: LPQHFVLQKP ATSQSQADTH ETTLLHTILP SLPVPELCTL QKPATSQSQA ELRANTRKAT LVHAAAMPSL PVPEHYSLQK PSTSQSQAEL RAKTRKATLV 301: HAAAIPSLPV PEHYSLLKPS TSQSQAEKPA TSQSQAETSR VQTVEPEACP DFTSVDKPEI VMSRSLTTRK APAPKRSLQE SRKNQDRRVE IHRRRAGHKP 401: IRFPRVMCSS VVMDNEKLRV LNLEKKVEKA GGLNEWVGSI GLGREFERML RGQRMSKFQM ANLTMEKLKQ MGALAVGPRR KLIHAIGCVY HPHCLRASFN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)