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AT3G08640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23596191 (2013): plastid plastid envelope
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plastid
  • PMID:22550958 (2012): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:16618929 (2006): unclear
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3411)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3411) (TAIR:AT3G08630.1); Has 11715 Blast hits to 4977 proteins in 490 species: Archae - 4; Bacteria - 2620; Metazoa - 4563; Fungi - 550; Plants - 2459; Viruses - 100; Other Eukaryotes - 1419 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKWBeggNOG:ENOG4111GA1EMBL:AC012562EMBL:AY081327
EMBL:AY128826EMBL:CP002686EnsemblPlants:AT3G08640EnsemblPlants:AT3G08640.1
entrez:820011GeneID:820011Genevisible:Q9C9Z2GO:GO:0000302
GO:GO:0009507GO:GO:0009536GO:GO:0009648GO:GO:0009793
GO:GO:0009941GO:GO:0016021GO:GO:0031969GO:GO:0048366
Gramene:AT3G08640.1hmmpanther:PTHR31620hmmpanther:PTHR31620:SF5HOGENOM:HOG000029112
InParanoid:Q9C9Z2InterPro:IPR021825KEGG:ath:AT3G08640OMA:CANNVAG
PaxDb:Q9C9Z2Pfam:PF11891PhylomeDB:Q9C9Z2PRIDE:Q9C9Z2
PRO:PR:Q9C9Z2ProteinModelPortal:Q9C9Z2Proteomes:UP000006548RefSeq:NP_187476.1
STRING:3702.AT3G08640.1TAIR:AT3G08640TMHMM:TMhelixUniGene:At.19866
UniProt:Q9C9Z2
Coordinates (TAIR10) chr3:+:2622992..2624005
Molecular Weight (calculated) 35254.60 Da
IEP (calculated) 9.02
GRAVY (calculated) 0.10
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)