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AT4G35630.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plastid
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphoserine aminotransferase
Curator
Summary (TAIR10)
Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway.
Computational
Description (TAIR10)
phosphoserine aminotransferase (PSAT); FUNCTIONS IN: O-phospho-L-serine:2-oxoglutarate aminotransferase activity; INVOLVED IN: L-serine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase class-V pyridoxal-phosphate binding site (InterPro:IPR020578), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Phosphoserine aminotransferase, subgroup (InterPro:IPR003248), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Phosphoserine aminotransferase (InterPro:IPR022278); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT2G17630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G35630-MONOMERBioCyc:MetaCyc:AT4G35630-MONOMERBioGrid:14997BRENDA:2.6.1.52
EC:2.6.1.52eggNOG:COG1932eggNOG:KOG2790EMBL:AB010408
EMBL:AL031135EMBL:AL161587EMBL:AY087331EMBL:AY128340
EMBL:BT025993EMBL:CP002687EMBL:D88541EnsemblPlants:AT4G35630
EnsemblPlants:AT4G35630.1entrez:829715Gene3D:3.40.640.10Gene3D:3.90.1150.10
GeneID:829715Genevisible:Q96255GO:GO:0004648GO:GO:0006564
GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009735
Gramene:AT4G35630.1gramene_pathway:2.6.1.52gramene_pathway:SERSYN-PWYHAMAP:MF_00160
hmmpanther:PTHR21152hmmpanther:PTHR21152:SF1HOGENOM:HOG000088965InParanoid:Q96255
InterPro:IPR000192InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424
InterPro:IPR020578InterPro:IPR022278KEGG:00260+2.6.1.52KEGG:00680+2.6.1.52
KEGG:00750+2.6.1.52KEGG:ath:AT4G35630KO:K00831OMA:CKTNVIW
PaxDb:Q96255Pfam:PF00266Pfam:Q96255PhylomeDB:Q96255
PIR:T04668PRIDE:Q96255PRO:PR:Q96255ProMEX:Q96255
PROSITE:PS00595ProteinModelPortal:Q96255Proteomes:UP000006548Reactome:R-ATH-977347
RefSeq:NP_195288.1scanprosite:PS00595SMR:Q96255STRING:3702.AT4G35630.1
SUPFAM:SSF53383TAIR:AT4G35630tair10-symbols:PSATTIGRfam:TIGR01364
TIGRFAMs:TIGR01364UniGene:At.19734UniGene:At.71197UniPathway:UPA00135
UniPathway:UPA00244UniProt:Q96255
Coordinates (TAIR10) chr4:+:16904205..16905497
Molecular Weight (calculated) 47361.90 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.23
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATTNSFLV GSNNTQIPAL KPKSSSQSFL HLSKPNTVNF VSKTKPVAVR CVASTTQVQD GVRSGSVGSQ ERVFNFAAGP ATLPENVLLK AQADLYNWRG
101: SGMSVMEMSH RGKEFLSIIQ KAESDLRQLL EIPQEYSVLF LQGGATTQFA ALPLNLCKSD DTVDFVVTGS WGDKAVKEAK KYCKTNVIWS GKSEKYTKVP
201: SFEELEQTPD AKYLHICANE TIHGVEFKDY PVPKNGFLVA DMSSNFCSKP VDVSKFGVIY GGAQKNVGPS GVTIVIIRKD LIGNAQDITP VMLDYKIHDE
301: NSSLYNTPPC FGIYMCGLVF EDLLEQGGLK EVEKKNQRKA DLLYNAIEES NGFFRCPVEK SVRSLMNVPF TLEKSELEAE FIKEAAKEKM VQLKGHRSVG
401: GMRASIYNAM PLAGVEKLVA FMKDFQAKHA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)