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AT2G41880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : guanylate kinase 1
Curator
Summary (TAIR10)
Guanylate kinase. Involved in nucleotide metabolism.
Computational
Description (TAIR10)
guanylate kinase 1 (GK-1); FUNCTIONS IN: guanylate kinase activity; INVOLVED IN: nucleotide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate kinase (InterPro:IPR008144), Guanylate kinase/L-type calcium channel (InterPro:IPR008145), Guanylate kinase, sub-group (InterPro:IPR017665); BEST Arabidopsis thaliana protein match is: guanylate kinase (TAIR:AT3G57550.1); Has 9957 Blast hits to 9932 proteins in 2781 species: Archae - 0; Bacteria - 5508; Metazoa - 1607; Fungi - 176; Plants - 140; Viruses - 105; Other Eukaryotes - 2421 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G41880-MONOMERBioCyc:MetaCyc:AT2G41880-MONOMERDNASU:818788EC:2.7.4.8
eggNOG:COG0194eggNOG:KOG0707EMBL:AC002339EMBL:AF204675
EMBL:AF204677EMBL:AK175145EMBL:BT028912EMBL:CP002685
EMBL:U90439EnsemblPlants:AT2G41880EnsemblPlants:AT2G41880.1entrez:818788
Gene3D:2.120.10.80Gene3D:3.40.50.300GeneID:818788Genevisible:P93757
GO:GO:0004385GO:GO:0005524GO:GO:0009117GO:GO:0046037
GO:GO:0046710GO:GO:0048229Gramene:AT2G41880.1gramene_pathway:2.7.4.8
gramene_pathway:DENOVOPURINE3-PWYhmmpanther:PTHR23117hmmpanther:PTHR23117:SF13HOGENOM:HOG000029159
InParanoid:P93757InterPro:IPR008144InterPro:IPR008145InterPro:IPR011043
InterPro:IPR015915InterPro:IPR017665InterPro:IPR027417KEGG:00230+2.7.4.8
KEGG:ath:AT2G41880KO:K00942ncoils:CoilOMA:HYHFADK
PaxDb:P93757Pfam:P93757Pfam:PF00625Pfscan:PS50052
PhylomeDB:P93757PIR:C84847PIR:T50675PRIDE:P93757
PRO:PR:P93757PROSITE:PS50052ProteinModelPortal:P93757Proteomes:UP000006548
Reactome:R-ATH-499943RefSeq:NP_565961.1SMART:SM00072SMR:P93757
STRING:3702.AT2G41880.1SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF52540
TAIR:AT2G41880tair10-symbols:AGK1tair10-symbols:GK-1TIGRfam:TIGR03263
TIGRFAMs:TIGR03263UniGene:At.12060UniProt:P93757
Coordinates (TAIR10) chr2:+:17475088..17477076
Molecular Weight (calculated) 42670.30 Da
IEP (calculated) 6.73
GRAVY (calculated) -0.26
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEAPAVLVD HPENGHSNGV CVKSEPENTE ITVDVGDRIF LIGGTHERNN FSIGVQIYDK ISNNWFSPIV LGTGPKPSKG YSAFVLEQGR ILVIKKGSPR
101: NDSIWFLEVD SPYVREQKKL LRKEVVAWSK GVRGNAEKPI VISGPSGVGK GTLISMLMKE FPSMFGFSVS HTTRSPRSME MDGVHYHFAD KKVMEKEIKD
201: GKFLEFASVH GNLYGTSIES VEAVTDSGKR CILDIDVQGA RSVRASSLDA IFIFVCPPSM KELEDRLRAR GTETEEQIQK RLRNAEAEIK EGISSGIFGL
301: ILYNDNLEEC YKKLKNLLGL DGLAHVNGVE IEGINLPIEY AVSKMEDKII IQETGKETRN KIVVDISSLN GGAPGRTRGI LVDAIKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)