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AT3G26680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA repair metallo-beta-lactamase family protein
Curator
Summary (TAIR10)
involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.
Computational
Description (TAIR10)
SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 1210 Blast hits to 1152 proteins in 342 species: Archae - 175; Bacteria - 149; Metazoa - 283; Fungi - 254; Plants - 166; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1236eggNOG:KOG1361EMBL:AB026648EMBL:AK117422
EMBL:BT005000EMBL:CP002686EMBL:X97827EMBL:X98130
EnsemblPlants:AT3G26680EnsemblPlants:AT3G26680.1EnsemblPlants:AT3G26680.2EnsemblPlants:AT3G26680.3
entrez:822280Gene3D:3.60.15.10GeneID:822280Genevisible:Q38961
GO:GO:0000784GO:GO:0003684GO:GO:0006281GO:GO:0006303
GO:GO:0031848GO:GO:0035312GO:GO:0036297GO:GO:0090305
Gramene:AT3G26680.1Gramene:AT3G26680.2Gramene:AT3G26680.3hmmpanther:PTHR23240
hmmpanther:PTHR23240:SF6HOGENOM:HOG000030842InParanoid:Q38961InterPro:IPR001279
InterPro:IPR011084KEGG:ath:AT3G26680KO:K15340OMA:AFRYGTI
PaxDb:Q38961Pfam:PF07522Pfam:Q38961PhylomeDB:Q38961
PRIDE:Q38961PRO:PR:Q38961ProteinModelPortal:Q38961Proteomes:UP000006548
RefSeq:NP_001030773.1RefSeq:NP_189302.1RefSeq:NP_850635.1SMR:Q38961
STRING:3702.AT3G26680.1SUPFAM:SSF56281TAIR:AT3G26680tair10-symbols:ATSNM1
tair10-symbols:SNM1UniGene:At.21140UniGene:At.43974UniProt:Q38961
Coordinates (TAIR10) chr3:+:9801309..9803517
Molecular Weight (calculated) 55164.10 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.50
Length 484 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFSDEDDDE NCFGSRFNDG VNEEEEDEEG FVFNDDVEEN EEEEGFASDF YKAGSDWSCL VEDEETVSSS VKKMKQSNLF QIWGLQENSP DTTKKMKQTD
101: LFQSWGLQKP SPFTSPASNS AKKTTSALGK RRRDSSFSND SPRPCPFYKK LPGTPFTVDA FRYGCVQGCS AYFLTHFHAD HYIGLTKAWS HGPIYCSSLT
201: SRLLRLSLSV NPSSIHPLEL DVEYTINGIK VTLIEANHCP GAALIHFRLL DGTCYLHTGD FRASKQMQTH PLLFNQRVHV LYLDTTYCNP RYKFPSKEDV
301: LSYVVRITKD FLRKQPKTLI VVGSYSIGKE CVYLAIAKAL GVKIFANASR RRILQSFGWD DISKNLSTDG KATCLHVLPM SSLKVERLDE HLKIYREQYG
401: AVLAFRPTGW TYSEKIGEHL DLIKPTSRGK ITIYGVPYSE HSSFTELREF VQFLRPDKII PTVNNGNAGT REKMQSCFRE WLRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)