AT1G53440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat transmembrane protein kinase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1); Has 190921 Blast hits to 136069 proteins in 4848 species: Archae - 114; Bacteria - 18757; Metazoa - 52699; Fungi - 11122; Plants - 85531; Viruses - 458; Other Eukaryotes - 22240 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19945959..19951562 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114858.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.99 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1035 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGFFFSTRKG LLLIIFICLD IFGSNAQLLP EDEVQTLRTI FRKLQNQTVN IERTSCLDRK WNFVAESTSK LPTSNITCDC TFNASSVCRV TNIQLRGFNL 0101: RGIIPPEFGN LTRLTEIDLV LNFLSGTIPT TLSQIPLEIL AVTGNRLSGP FPPQLGQITT LTDVIMESNL FTGQLPPNLG NLRSLKRLLI SSNNITGRIP 0201: ESLSNLKNLT NFRIDGNSLS GKIPDFIGNW TRLVRLDLQG TSMEGPIPAS ISNLKNLTEL RITDLRGPTS PFPDLQNMTN MERLVLRNCL IREPIPEYIG 0301: TSMTMLKLLD LSSNMLNGTI PDTFRSLNAF NFMYLNNNSL TGPVPQFILD SKQNIDLSYN NFTQPPTLSC NQLDVNLISS YPSVTNNSVQ WCLRKDLPCP 0401: GDAHHSSLFI NCGGNRLKVD KDEYADDLNK RGASTFSSVS ERWGYSSSGA WLGNDGATYL ATDTFNLINE STPEYYKTAR LASQSLKYYG LCMRRGSYKV 0501: QLYFAEIMFS NDQTYSSLGR RLFDIYVQGI LLERDFNIAQ RAGGVGKPFL RQVDEVQVNG STLEIHLKWT GKGTNVIPTR GVYGPLISAI TVTPNFKVDT 0601: GKPLSNGVVA GIVIAACVAF GLLVLVILRL TGYLGGKEVD ENEELRGLDL QTGSFTLKQI KRATNNFDPE NKIGEGGFGP VYKGVLADGM TIAVKQLSSK 0701: SKQGNREFVT EIGMISALQH PNLVKLYGCC IEGKELLLVY EYLENNSLAR ALFGTEKQRL HLDWSTRNKV CIGIAKGLAY LHEESRLKIV HRDIKATNVL 0801: LDLSLNAKIS DFGLAKLDEE ENTHISTRIA GTIGYMAPEY AMRGYLTDKA DVYSFGVVCL EIVSGKSNTN YRPKEEFIYL LDWAYVLQEQ GSLLELVDPD 0901: LGTSFSKKEA MRMLNIALLC TNPSPTLRPP MSSVVSMLQG KIKVQPPLVK READPSGSAA MRFKALEHLS QDSESQVSTY TRNKEHKSSS SMDGPWVDSS 1001: FSDPSKDVSL LQQEEGNSSS SSRRLLDDLT DVEIE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)