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AT1G74750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G18900.2); Has 54690 Blast hits to 14739 proteins in 296 species: Archae - 3; Bacteria - 64; Metazoa - 559; Fungi - 736; Plants - 51726; Viruses - 0; Other Eukaryotes - 1602 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC008263EMBL:CP002684
EnsemblPlants:AT1G74750EnsemblPlants:AT1G74750.1entrez:843814Gene3D:1.25.40.10
GeneID:843814Genevisible:Q9SSF9Gramene:AT1G74750.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF268HOGENOM:HOG000244210InParanoid:Q9SSF9InterPro:IPR002625
InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9SSF9KEGG:ath:AT1G74750
OMA:SCYWLINPaxDb:Q9SSF9Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:Q9SSF9Pfscan:PS50828Pfscan:PS51375
PhylomeDB:Q9SSF9PIR:G96776PRIDE:Q9SSF9PRO:PR:Q9SSF9
PROSITE:PS50828PROSITE:PS51375ProteinModelPortal:Q9SSF9Proteomes:UP000006548
RefSeq:NP_177613.1SMART:SM00463SMR:Q9SSF9STRING:3702.AT1G74750.1
SUPFAM:0053808SUPFAM:SSF160443TAIR:AT1G74750TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.52517UniProt:Q9SSF9
Coordinates (TAIR10) chr1:+:28086800..28089367
Molecular Weight (calculated) 94714.60 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.26
Length 855 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP
101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN
201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL
401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV
501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM
701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS
801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)