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AT2G40670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : response regulator 16
Curator
Summary (TAIR10)
response regulator 16
Computational
Description (TAIR10)
response regulator 16 (RR16); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 17 (TAIR:AT3G56380.1); Has 23045 Blast hits to 22821 proteins in 2006 species: Archae - 145; Bacteria - 19499; Metazoa - 15; Fungi - 406; Plants - 1290; Viruses - 6; Other Eukaryotes - 1684 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:BT043482EnsemblPlants:AT2G40670
EnsemblPlants:AT2G40670.1entrez:818662ExpressionAtlas:B4G294GeneID:818662
GO:GO:0000160GO:GO:0005622Gramene:AT2G40670.1hmmpanther:PTHR26402
hmmpanther:PTHR26402:SF521InterPro:IPR001789InterPro:IPR011006PaxDb:B4G294
Pfam:PF00072Pfam:Q9SHC2Pfscan:PS50110PhylomeDB:B4G294
PRIDE:B4G294PROSITE:PS50110ProteinModelPortal:B4G294RefSeq:NP_181599.1
SMART:SM00448SMR:B4G294STRING:3702.AT2G40670.2SUPFAM:SSF52172
TAIR:AT2G40670tair10-symbols:ARR16tair10-symbols:RR16UniGene:At.10147
UniProt:B4G294UniProt:Q9SHC2
Coordinates (TAIR10) chr2:+:16970258..16971120
Molecular Weight (calculated) 18269.40 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.06
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSGGSCSS LMDVVAYDHH LHHGHDEELH VLAVDDNLID RKLVERLLKI SCCKVTTAEN ALRALEYLGL GDQNQHIDAL TCNVMKVSLI ITDYCMPGMT
101: GFELLKKVKE SSNLREVPVV IMSSENIPTR INKCLASGAQ MFMQKPLKLA DVEKLKCHLM NCRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)