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AT2G39740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.907
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleotidyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotidyltransferase family protein; BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT3G45750.1); Has 1708 Blast hits to 1608 proteins in 227 species: Archae - 0; Bacteria - 13; Metazoa - 799; Fungi - 328; Plants - 255; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G39740-MONOMEREC:2.7.7.52eggNOG:COG5260eggNOG:KOG2277
EMBL:AC003000EMBL:AK227869EMBL:BT015881EMBL:BT020198
EMBL:CP002685EnsemblPlants:AT2G39740EnsemblPlants:AT2G39740.1entrez:818559
GeneID:818559GO:GO:0000932GO:GO:0005634GO:GO:0005737
GO:GO:0016779GO:GO:0050265GO:GO:0060964GO:GO:0071076
Gramene:AT2G39740.1hmmpanther:PTHR12271hmmpanther:PTHR12271:SF40HOGENOM:HOG000082987
IntAct:Q5XET5KEGG:ath:AT2G39740OMA:HPQAYNTPaxDb:Q5XET5
PhylomeDB:Q5XET5PIR:T01004PRIDE:Q0WSQ3ProteinModelPortal:Q5XET5
Proteomes:UP000006548RefSeq:NP_181504.2SMR:Q5XET5STRING:3702.AT2G39740.1
SUPFAM:SSF81301SUPFAM:SSF81631TAIR:AT2G39740UniGene:At.21484
UniGene:At.37137UniProt:Q5XET5
Coordinates (TAIR10) chr2:+:16576250..16578704
Molecular Weight (calculated) 57595.60 Da
IEP (calculated) 10.84
GRAVY (calculated) -0.47
Length 511 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRNPFLDPT LQEILQVIKP TRADRDTRIT VIDQLRDVLQ SVECLRGATV QPFGSFVSNL FTRWGDLDIS VDLFSGSSIL FTGKKQKQTL LGHLLRALRA
101: SGLWYKLQFV IHARVPILKV VSGHQRISCD ISIDNLDGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHN INDSKTGTFN SYSLSLLVIF HFQTCVPAIL
201: PPLRVIYPKS AVDDLTGVRK TAEESIAQVT AANIARFKSE RAKSVNRSSL SELLVSFFAK FSDINVKAQE FGVCPFTGRW ETISSNTTWL PKTYSLFVED
301: PFEQPVNAAR SVSRRNLDRI AQVFQITSRR LVSECNRNSI IGILTGQHIQ ESLYRTISLP SQHHANGMHN VRNLHGQARP QNQQMQQNWS QSYNTPNPPH
401: WPPLTQSRPQ QNWTQNNPRN LQGQPPVQGQ TWPVITQTQT QQKSPYKSGN RPLKNTSAGS SQNQGHIGKP SGHMNGVNSA RPAYTNGVNS ARPPSKIPSQ
501: GGQIWRPRHE Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)