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AT2G39710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Encodes a Cysteine-rich peptide (CRP) family protein
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G02190.1); Has 2560 Blast hits to 2551 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 620; Fungi - 65; Plants - 1821; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G39710-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AC003000
EMBL:AC003674EMBL:AF370142EMBL:AY051049EMBL:CP002685
EnsemblPlants:AT2G39710EnsemblPlants:AT2G39710.1entrez:818555Gene3D:2.40.70.10
GeneID:818555GO:GO:0004190Gramene:AT2G39710.1hmmpanther:PTHR13683
hmmpanther:PTHR13683:SF347HOGENOM:HOG000238458InterPro:IPR001461InterPro:IPR001969
InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121
KEGG:ath:AT2G39710MEROPS:A01.A29OMA:MGPVYTAPANTHER:PTHR13683
Pfam:PF14541Pfam:PF14543Pfscan:PS51767PhylomeDB:O22282
PIR:T01000PROSITE:PS00141PROSITE:PS51767Proteomes:UP000006548
RefSeq:NP_565911.1scanprosite:PS00141SMR:O22282STRING:3702.AT2G39710.1
SUPFAM:SSF50630TAIR:AT2G39710UniGene:At.20674UniProt:O22282
Coordinates (TAIR10) chr2:-:16562051..16563379
Molecular Weight (calculated) 48007.50 Da
IEP (calculated) 7.43
GRAVY (calculated) 0.00
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDSSSSSSL SLSKNFLRIS VLLLIFPLTF CKTSSTNQTL LFSLKTQKLP QSSSDKLSFR HNVTLTVTLA VGDPPQNISM VLDTGSELSW LHCKKSPNLG
101: SVFNPVSSST YSPVPCSSPI CRTRTRDLPI PASCDPKTHL CHVAISYADA TSIEGNLAHE TFVIGSVTRP GTLFGCMDSG LSSNSEEDAK STGLMGMNRG
201: SLSFVNQLGF SKFSYCISGS DSSGFLLLGD ASYSWLGPIQ YTPLVLQSTP LPYFDRVAYT VQLEGIRVGS KILSLPKSVF VPDHTGAGQT MVDSGTQFTF
301: LMGPVYTALK NEFITQTKSV LRLVDDPDFV FQGTMDLCYK VGSTTRPNFS GLPMVSLMFR GAEMSVSGQK LLYRVNGAGS EGKEEVYCFT FGNSDLLGIE
401: AFVIGHHHQQ NVWMEFDLAK SRVGFAGNVR CDLASQRLGL RD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)