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AT2G39840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : type one serine/threonine protein phosphatase 4
Curator
Summary (TAIR10)
Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.
Computational
Description (TAIR10)
type one serine/threonine protein phosphatase 4 (TOPP4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 2 (TAIR:AT5G59160.3); Has 7176 Blast hits to 6978 proteins in 618 species: Archae - 78; Bacteria - 533; Metazoa - 2415; Fungi - 1410; Plants - 987; Viruses - 16; Other Eukaryotes - 1737 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G39840-MONOMERBioGrid:3909EC:3.1.3.16eggNOG:COG0639
eggNOG:KOG0374EMBL:AC003000EMBL:AK229028EMBL:BT026118
EMBL:CP002685EMBL:M93411EnsemblPlants:AT2G39840EnsemblPlants:AT2G39840.1
entrez:818571Gene3D:3.60.21.10GeneID:818571Genevisible:P48484
GO:GO:0000164GO:GO:0004722GO:GO:0005634GO:GO:0006468
GO:GO:0006470GO:GO:0010161GO:GO:0046872Gramene:AT2G39840.1
hmmpanther:PTHR11668hmmpanther:PTHR11668:SF259HOGENOM:HOG000172697InParanoid:P48484
InterPro:IPR004843InterPro:IPR006186InterPro:IPR029052InterPro:IPR031675
KEGG:ath:AT2G39840KO:K06269OMA:QLCTTARPaxDb:P48484
Pfam:P48484Pfam:PF00149Pfam:PF16891PhylomeDB:P48484
PIR:S31088PRIDE:P48484PRINTS:PR00114PRO:PR:P48484
PROSITE:PS00125ProteinModelPortal:P48484Proteomes:UP000006548RefSeq:NP_181514.1
scanprosite:PS00125SMART:SM00156SMR:P48484STRING:3702.AT2G39840.1
SUPFAM:SSF56300TAIR:AT2G39840tair10-symbols:TOPP4UniGene:At.310
UniProt:P48484
Coordinates (TAIR10) chr2:+:16627430..16628789
Molecular Weight (calculated) 36373.90 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.17
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTTTTQGQ QTAIDSAVLD DIIRRLTEVR LARPGKQVQL SEAEIKQLCT TARDIFLQQP NLLELEAPIK ICGDIHGQYS DLLRLFEYGG FPPSANYLFL
101: GDYVDRGKQS LETICLLLAY KIKYPGNFFL LRGNHECASI NRIYGFYDEC KRRFNVRVWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL DHLDEIRNLP
201: RPTMIPDTGL LCDLLWSDPG KDVKGWGMND RGVSYTFGPD KVSEFLTKHD LDLVCRAHQV VEDGYEFFAD RQLVTVFSAP NYCGEFDNAG AMMSVDENLM
301: CSFQILKPAE KKTKFMMSTK I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)