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AT1G71040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31541795 (2020): plasma membrane
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cupredoxin superfamily protein
Curator
Summary (TAIR10)
Encodes LPR2. Function together with LPR1 (AT1G23010) and a P5-type ATPase (At5g23630/PDR2) in a common pathway that adjusts root meristem activity to Pi (inorganic phosphate) availability.
Computational
Description (TAIR10)
Low Phosphate Root2 (LPR2); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cellular response to phosphate starvation, meristem maintenance; LOCATED IN: cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G23010.1); Has 2992 Blast hits to 2635 proteins in 791 species: Archae - 14; Bacteria - 2507; Metazoa - 11; Fungi - 66; Plants - 272; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2564-MONOMEREC:1.-.-.-eggNOG:COG2132eggNOG:ENOG410IHX7
EMBL:AC016972EMBL:AY050818EMBL:AY062464EMBL:AY091420
EMBL:CP002684EnsemblPlants:AT1G71040EnsemblPlants:AT1G71040.1entrez:843444
Gene3D:2.60.40.420GeneID:843444Genevisible:Q949X9GO:GO:0005507
GO:GO:0005618GO:GO:0005789GO:GO:0005794GO:GO:0005829
GO:GO:0010073GO:GO:0016020GO:GO:0016036GO:GO:0016722
Gramene:AT1G71040.1hmmpanther:PTHR11709hmmpanther:PTHR11709:SF89HOGENOM:HOG000096435
InParanoid:Q949X9InterPro:IPR001117InterPro:IPR008972InterPro:IPR011706
KEGG:ath:AT1G71040OMA:LANNAPYPaxDb:Q949X9Pfam:PF00394
Pfam:PF07731Pfam:Q949X9PhylomeDB:Q949X9PIR:G96734
PRIDE:Q949X9PRO:PR:Q949X9ProteinModelPortal:Q949X9Proteomes:UP000006548
RefSeq:NP_565008.1SMR:Q949X9STRING:3702.AT1G71040.1SUPFAM:SSF49503
TAIR:AT1G71040tair10-symbols:LPR2UniGene:At.17817UniProt:Q949X9
Coordinates (TAIR10) chr1:-:26797201..26800224
Molecular Weight (calculated) 66168.60 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.31
Length 581 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPSRRRMTR DMLLLIVTMA WLVTGDEGGI KQEERLFNLG KLEMFVDKLP HIPTLHGYHF VNGFLKPKSL HIGMFFKKWK FHRDLPATPV FAYGTSKRSA
101: TVPGPTIEAV YGVDTYVTWR NHLPLHHILP WDPTISPAIP KHGGIPTVVH LHGGIHEPTS DGNADSWFTA GFKETGSKWT KKTTHYVNKQ QPGNMWYHDH
201: AAGLTRVNLL AGLLGSYILR HSSVESPLRL PTGREFDRPL VIFDRSFRKD GSIYMNATGN NPTIHPQWQP EYFGDAIIVN GKAWPRLTVR RRKYRFRITN
301: ASNARFFRFF FSNGLDFIVV GSDSAYLAKP VSTKSVLLAP SEIVDVLVDF SKSTSKTAIL ANNAPYPYPS GDPVTEENSK VMKFIINYKS EVDTSIIPKK
401: LIEYPPAHVS TSTRTRYIAM FEYVSSIDEP THLYINGLPY NAPVTETPKI GTSEVWEVIN LTEDNHPLHI HLGLFKVLEQ TALVKSEEFI ECMTKRNDAV
501: KCEISKYARG NKTAVTVHER GWKNVFKMMP GHVTKILVRF SYIHSNESYS FDATQEPGYV YHCHILDHED NMMMRPFAMV L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)