AT4G25640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : detoxifying efflux carrier 35 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism, affecting Root growth, seed development and germination, and pollen development, release and viability. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
detoxifying efflux carrier 35 (DTX35); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: anther dehiscence, flavonoid metabolic process, pollen development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G00350.1); Has 11724 Blast hits to 11622 proteins in 2105 species: Archae - 230; Bacteria - 8860; Metazoa - 143; Fungi - 322; Plants - 1354; Viruses - 0; Other Eukaryotes - 815 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13076953..13078965 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53228.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.80 | ||||||||||||||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPTAPLLTH GGEVEEDYAP ARSWTDVKRV LSTESAKLWM IAAPVGFNII CQYGVSSVTN IFVGHIGEVE LSAVSISLSV IGTFSFGFLL GMGSALETLC 101: GQAYGAGQVN MLGVYMQRSW IILFVSCFFL LPIYIFATPV LRLLGQAEEI AVPAGQFTLL TIPQLFSLAF NFPTSKFLQA QSKVVAIAWI GFVALSLHVI 201: MLWLFIIEFG WGTNGAALAF NITNWGTAIA QIVYVIGWCN EGWTGLSWLA FKEIWAFVRL SIASAVMLCL EIWYMMSIIV LTGRLDNAVI AVDSLSICMN 301: INGLEAMLFI GINAAISVRV SNELGLGRPR AAKYSVYVTV FQSLLIGLVF MVAIIIARDH FAIIFTSSKV LQRAVSKLAY LLGITMVLNS VQPVVSGVAV 401: GGGWQGLVAY INLGCYYIFG LPFGYLLGYI ANFGVMGLWS GMIAGTALQT LLLLIVLYKT NWNKEVEETM ERMKKWGGSE TTSKDILA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)